Nurt015652.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_905147175.1
- Location
- LR989989.1:12814981-12817564[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-76 2.7e-71 241.0 21.7 1 260 9 262 9 293 0.86 2 2 1 2.8e+04 -7.3 15.4 1 44 289 332 289 364 0.56
Sequence Information
- Coding Sequence
- ATGATAAAGTTTATATCGTTACAGGCGGAACAACGGCTGGCTGCTCGACGAGCGGCGCGGGCGGAGGCGCGAGAGATACGGATGAGGGAGCTCGAGCGACAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGACATGTACGCAGAGACAGTGGGCCGGCGGACGGGCGGCCGGCTGGCGGCCATGAGCCCGAGCGTGCTGCACTCGCCGCGGCGGAGCTCGGAGGACTCGGACGATGTGCTCAGTATCAAGGACCTCAGGCATGAGTTGAAGGAAGTTGAAGAAAAGTTTCGCAAGGCGATGATCTTAAACGCTCAGCTGGATAACGACAAGGCGGCGCTCGGGTACCAGCTCGAGCTACTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGTACGCGCAGTTACAGCGCGAACACAAAGAGAAGTGCTCGAGCCACGAGCGCCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGTGCTGGCGCGGGACGCCGTGCGCGCGCGGGACGCGGCGGCGGCGGCGGCGGGCCGCGCCTTCGTGGAGGCGGCCGCCGCGCCCGACGCGCTCGCCGGCGAGCCCTGCGGCAGCGTGCCGCCGCTCGCGCTCGTGTCGCACCACTCGCAGCAGCTGCTCGACGACGCCGGCGAGGGCACGCTCGACGTGCGGCTGGAGCGGCTGGCGGGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCGGCGCGACAGAACGGCGTGGCGCACCCCGAGCGCGACGTGGACTGCGAGCTGGAGGCGCTGCGCAAGGCGGCGTCCGACGCCAAGGCCCGCGCCGCGCGCGCCGAGGCCGAGGCGGCGCTGCACGCGGCCGCCGTCGTGCGCCTCGAGGCGCAGGTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGCGAGGCGCGGGAAGCATTAAACCGAGTTGAGGAATTGGAAACGGAGAACAGTCACCTCACGAAACGGCTCGACAAACTCAAGAACGCGAAGTCCGCCCTGCTGAAGGACCTGTGA
- Protein Sequence
- MIKFISLQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGGRLAAMSPSVLHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVVLARDAVRARDAAAAAAGRAFVEAAAAPDALAGEPCGSVPPLALVSHHSQQLLDDAGEGTLDVRLERLAGAKAALEGEVRKLKLQLNDERAARQNGVAHPERDVDCELEALRKAASDAKARAARAEAEAALHAAAVVRLEAQVARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843553;
- 90% Identity
- iTF_00843553; iTF_00778024; iTF_00775268; iTF_00247211; iTF_00954478; iTF_01181904; iTF_01508081; iTF_01017750; iTF_00824762; iTF_00896827; iTF_00779518;
- 80% Identity
- -