Bdap002339.1
Basic Information
- Insect
- Brenthis daphne
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_947093115.1
- Location
- OX352482.1:10865008-10872800[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-76 1.6e-71 241.5 23.7 1 264 40 296 40 318 0.91 2 2 1 2.4e+04 -7.5 19.5 1 48 319 365 319 393 0.72
Sequence Information
- Coding Sequence
- ATGTCAAATACGAGCTCACAGGCCAGACTAGATTCGATAATATTCGTAAATCGTTGGCGTGGCAGCAAGTGGCTGGCGAGCGTGGAGCTCACCGGTCGCTTGCTGCTCCAGCGTATTGCAGAACAACGACTAGCGGCGCGTCGTGCTGCGCGGGCGGAGGCGCGCGAAATCCGCATGCGCGAGTTGGAACGACAGCAGCGCGAGCAAGAGGACCATGCTGATAAGGCGTATGATATGTACGAGACGGTGGGAAGGCGGACAGGCAGTCGATTAGCCGTGTTGAGCCCCAGCGCGCTACACTCGCCGCGGCGCAGTTCAGAGGATTCTGATGATGTGCTCAGCATCAAGGACCTTAGGCATGAACTAAAAGAAGTGGAGGAGAAGTTCCGCAAAGCCATGATCCTCAACGCCCAGCTGGACAACGACAAAGCGGCGCTCGGCTACCAGCTCGAGTTGCTCAAGGACAGGATAGAAGAGTTGCAAGAGGAGTATGCGCAGTTACAGCGCGAGCACAAAGAGAAGTGTTCAACGCACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGGCGTGGCGCGGGACGCCGTGCGCGCGCGCGACGCGGCGGCGGCGGCGGCCGGCCGCGCCTTCGTGGAGGCGGCGGCGGCGCCAGACGCGCCCGCTGGCGCCGCCTGCGGCCGCGTGCCGCCGCTCGCGCTCGTCACGCACGAGAGCGAGCGCCTGCTCGACGACGCGGGCGAGGGCACGCTGGACGTGCGGCTGGAGCGGCTGGCGGGCGCGAAGGCGGCGCTCGAGGGGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCGCGGCACAACGGCGTGGCGCACCTGCACCAGGACGTCGAGGCCGAGCTGGAGACGCTCCGCAAGTCGGCGTCGGAGGCGAAGGCGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGCGGCGCGCCTGGAGGCGCAGGTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGCGAGAGAAGCGCTAAATCGAGTGGAAGAATTAGAAACCGAAAATAGCCATCTTACAAAACGTCTAGACAAATTGAAAAATGCCAAGTCCGCGCTATTAAAGGACCTGTGA
- Protein Sequence
- MSNTSSQARLDSIIFVNRWRGSKWLASVELTGRLLLQRIAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYETVGRRTGSRLAVLSPSALHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSTHERLKREHASLEREVGVARDAVRARDAAAAAAGRAFVEAAAAPDAPAGAACGRVPPLALVTHESERLLDDAGEGTLDVRLERLAGAKAALEGEVRKLKLQLNEERAARHNGVAHLHQDVEAELETLRKSASEAKARAARAEAEAALQAAAAARLEAQVARLRARQDHQDEHEEALKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843553;
- 90% Identity
- iTF_01080733;
- 80% Identity
- -