Lcam012292.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147385.1
- Location
- LR990229.1:14429214-14433589[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-77 1e-72 245.7 26.2 1 298 13 296 13 298 0.88 2 2 1 3e+04 -7.4 17.7 1 48 294 340 294 368 0.71
Sequence Information
- Coding Sequence
- ATGTTTTCGTCAGAATTACTCACTGCCTTAAAATCAGCGGAACAAAGACTAGCGGCACGTCGCGCAGCGCGGGCGGAGGCTCGGGAGATCCGCATGCGGGAGTTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCTGATAAAGCGTATGATATGTATGCAGAGACGGTGGGGAGGAGATCGGGGGGTCGGCTAGCGGCGTTGAGCCCCAGCTCGTTACACTCGCCGCGTCGTAGTTCAGAGGATTCCGATGATGTACTCAGCATCAAGGACCTAAGGCATGAGCTGAAAGAGGTAGAAGAGAAATTCCGTAAGGCGATGATCCTAAATGCCCAATTGGACAATGATAAAGCTGCACTCGGATACCAGTTAGAACTGCTCAAGGATAGGATAGAGGAGTTGCAAGAAGAATACGCGCAGTTACAGCGTGAACACAGAGAGAAATGTTCATCCCACGAACGCCTCAAGCGAGAGTATGCGTCGTTAGAACGCGAAGTGGTGCTCGCCCGGGACGCCATCAGAGCGCGGGACGCGGCTGCTGCGGCGGCGGGACGTGCCTTCGTGGAAGCGGCGACAGCGCCCGACGCGCAGGCGGGAGAGCAGTGCGGGAGTGTCCCGCCGCTGGCGCTGGTGTCCCACCAGTCTGAACAGCTGCTTAATGATGCGGGAGAAGGCACATTAGATGTCCGGCTTGAACGGCTGGCGAGCGCTAAGACGTCGTTAGAGGGAGAGGTGCGGAAGCTCAAACTGCAGTTGAATGATGAACGTGCTGCGAGACAAAATGGCGTCTCCTCCCATCTCGATAGGGATCATGATAATGAATTGGAAACCCTTCGAAAATCAGTATCCGATGCAAAAGGGAGAGCGGCCCGAGCGGAAGCCGAAGCGGCCCTACAAGCGGCGGCGGTAGCTCGGCTAGAGGCGCAAGTAGCGAGACTTAGAGCCAGGCAGGACCACCAGGATGAGCATGAGGAGGCACTGAAACAGGAAAGGAGACGGTTGCAGAGAGAGGCAAGAGAAGCGTTAAACCGAGTAGAAGAGTTAGAAACAGAAAATAGTCATCTTACGAAAAGACTGGACAAATTGAAGAATGCCAAGTCTGCGCTGCTGAAGGACCTGTGA
- Protein Sequence
- MFSSELLTALKSAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRSGGRLAALSPSSLHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHREKCSSHERLKREYASLEREVVLARDAIRARDAAAAAAGRAFVEAATAPDAQAGEQCGSVPPLALVSHQSEQLLNDAGEGTLDVRLERLASAKTSLEGEVRKLKLQLNDERAARQNGVSSHLDRDHDNELETLRKSVSDAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEALKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843553;
- 90% Identity
- iTF_01080733;
- 80% Identity
- -