Vtam005986.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037043105.1
- Location
- CM073283.1:12465167-12468229[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-75 3.1e-71 240.6 21.9 1 258 60 311 60 339 0.91 2 2 1 2.5e+04 -7.0 14.9 1 44 340 383 340 418 0.55
Sequence Information
- Coding Sequence
- atggAGGAGGATTCATTTCACTCTGATCGTAGGCGCGAGTATACGCAATCATATGGAACTGAACCGGAACTTACTTTAAAGCAAGCTTTGAGATACATAAGATTCACTAGTCTCAATAATCAAGTAGTTTGTTTTCCAAATGAGTGGTTATTTGGTACACGGAACCGCAATCCTCGGGCGGAGCAACGGCTGGCTGCGCGACGAGCGGCGCGGGCGGAGGCGCGAGAGATACGTATGAGGGAGCTGGAGCGACAACAGCGCGAGCAGGAGGACCATGCCGACAAGGCGTATGATATGTACGCAGAGACAGTGGGTCGGCGGACGGGCAGTCGGCTAGCGGCCATGAGTCCGAGCGTGCTGCACTCGCCGAGACGAAGCTCGGAGGACTCGGACGATGTGCTCAGCATCAAGGACCTCAGGCATGAGCTGAAGGAAGTCGAGGAAAAGTTTCGCAAAGCGATGATCTTAAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCAGGAGGAGTACGCGCAGCTCCAGCGCGAACACAAGGAGAAGTGCTCGAGTCACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGTGCTGGCGCGGGACGCCGTGCGCGCGCGGgacgcggcggcggcggcggcgggacGCGCCTTCGTGGAGGCGGCCGCCGCGCCCGACGCGCTCGCCGGCGAGCCGTGCGGCAGCGTGCCGCCGCTCGCGCTCGTGTCGCACCACTCGCAGCAGCTGCTCGACGACGCCGGCGAGGGCACGCTCGACGTGCGGCTGGAGCGGCTGGCGGGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCGGCGCGGCAGAACGGCGTGGCGCACCCCGAGCGCGACGTGGACTGCGAGCTGGAGGCGCTGCGCAAGGCGGCGTCCGAGGCCAAGgcccgcgccgcgcgcgccgaGGCCGAGGCGGCGCTGCACGCGGCCGCCGTCGTGCGCCTCGAGGCGCAGGTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGGCGCCGCCTGCAGCGCGAGGCGAGGGAAGCATTAAACCGAGTCGAGGAGTTGGAAACGGAGAACAGTCACCTCACGAAACGGCTCGACAAACTCAAGAACGCGAAGTCCGCCCTGCTGAAGGACCTGTGA
- Protein Sequence
- MEEDSFHSDRRREYTQSYGTEPELTLKQALRYIRFTSLNNQVVCFPNEWLFGTRNRNPRAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGSRLAAMSPSVLHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVVLARDAVRARDAAAAAAGRAFVEAAAAPDALAGEPCGSVPPLALVSHHSQQLLDDAGEGTLDVRLERLAGAKAALEGEVRKLKLQLNDERAARQNGVAHPERDVDCELEALRKAASEAKARAARAEAEAALHAAAVVRLEAQVARLRARQDHQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506357;
- 90% Identity
- iTF_01080733;
- 80% Identity
- -