Hcha017343.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030704555.1
- Location
- CM060827.1:5822605-5838762[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-76 5.8e-72 243.1 23.2 1 264 123 380 123 407 0.89 2 2 1 2.6e+04 -6.4 14.3 11 162 413 461 401 481 0.45
Sequence Information
- Coding Sequence
- ATGGGTGAACGTTGTGAAATGGCTTCTCCCGAAAACAGTGACGATGAAAGTGGAGATGCATTTACAGATGGTGATTTTGGTGATTCTGAGGAAGAAACGATAGTAGGACATCATTTGATTAAAACTGCACATATACCGGTTAATGAAAGTGTTAATTCTGAAATTAAATTGAAGAGCAGTATAGATTTTATAGACAATAATAGTTTAGACCAATCAACTTGTGTACATGAGGACATTGATGATATTAGTGAAAATATGCAGCTAAATGACTTTACAAACGGTGATACATCAACGGCGGATTTAGGAAGAGATTCACAAAGCGACAATGGCTCCATCGTTGGAATTCTCGGAGATCAACATAATCATGCGGAACAGCGGCTGGCGGCGCGTCGTGCGGCGCGAGCAGAAGCGCGCGAGATCCGCATGCGAGAGCTAGAACGTCAGCAGAGAGAACAAGAAGACCATGCTGATAAAGCGTACGATATGTACGCAGAAACGGTGGGAAGAAGGACAGGCAGTCGGCTAGCGGCGTTAAGTCCCAGCGCAATGCACTCTCCTAGGCGTAGTTCAGAGGATTCGGACGATGTTCTTAGCATCAAGGACCTTAggcaTGAGCTAAAAGAAGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTTAATGCCCAATTAGACAATGACAAAGCGGCGCTTGGATACCAGCTCGAGTTATTAAAGGATAGGATAGAGGAGTTACAGGAGGAATATGCGCAATTACAGCGCGAACACAAAGAAAAATGCTCAGCGCACGAGCGTCTGAAACGTGAACACGCGTCCTTAGAACGCGAAGTGTCACTCGCGCGGGACGCGGTGCGCGCGCGGGACGCCGCCGCCGCGGCTGCGGGGCGCGCCTTCGTGGaggccgccgccgcgcccgacGCGCCGCCCGGCGACCGCTGCGGCAGCGTGCCGCCGCTCGCGCTCGTGTCGCACACCTCGGAGCAGCTGCTCAACGACGCGGGCGAGGGGACGCTAGacGTGCGGCTCGAGCGTCTGGCAAGTGCTAAAGTTGAATTAGAAGGCGAAGTGCGTAAACTCAAGCTGCAGCTAAACGACGAGCGTGCGGCGAGACAAAATGGCGTCGCGCATATGCACCGAGATGTTGATGGCGAGTTGGAAACCCTCCGTAAATCGGTATCAGAAGCAAAAGGTCGCGCGGCTCGAGCAGAAGCCGAGGCGGCCATACAAGCGGCGGCGGTCGCGCGTCTGGAGGCACAAGTCGCGCGACTAAAGGCCAGGCAGGACCACCAAGATGAGCACGAGGAGATGCTGAAGCAGGAGAGGCGGAAGCTGCAGAGGGAGGCGAGAGAAGCACTAAACCGAGTAGAAGAACTAGAAACAGAAAACAGTCATCTAACAAAACGTCTTGACAAACTGAAGAACGCCAAGTCAGCTCTATTAAAGGACCTGTGA
- Protein Sequence
- MGERCEMASPENSDDESGDAFTDGDFGDSEEETIVGHHLIKTAHIPVNESVNSEIKLKSSIDFIDNNSLDQSTCVHEDIDDISENMQLNDFTNGDTSTADLGRDSQSDNGSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGSRLAALSPSAMHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKREHASLEREVSLARDAVRARDAAAAAAGRAFVEAAAAPDAPPGDRCGSVPPLALVSHTSEQLLNDAGEGTLDVRLERLASAKVELEGEVRKLKLQLNDERAARQNGVAHMHRDVDGELETLRKSVSEAKGRAARAEAEAAIQAAAVARLEAQVARLKARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00781041;
- 90% Identity
- iTF_01080733;
- 80% Identity
- -