Hher000677.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- lrrfip2
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000123.1:519967-526938[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-76 2.3e-72 244.0 23.3 1 264 31 288 31 315 0.89 2 2 1 2e+04 -6.7 14.9 11 162 321 369 309 388 0.46
Sequence Information
- Coding Sequence
- atgtttgtaccGTGTAAAAATAGAACCCGAGTGGGGAGCGTGCATAGGGGACAAGTAAGAGCACTTGTTAAAATACGcgcaaagttaaaaGCGGAACAGCGGCTGGCGGCGCGTCGTGCTGCGCGGGCAGAAGCGCGCGAGATCCGCATGCGAGAGCTAGAACGTCAGCAGAGAGAACAAGAAGACCATGCTGATAAAGCGTACGATATGTACGCAGAAACAGTGGGAAGAAGGACAGGCAGTCGGCTAGCAGCGTTAAGTCCCAGCGCAATGCACTCTCCTCGGCGTAGTTCAGAGGATTCGGACGATGTTCTTAGCATCAAGGACCTTAggcatGAGCTGAAAGAAGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTTAATGCCCAATTAGACAATGACAAAGCGTCGCTTGGATACCAGCTCGAGTTATTAAAGGATAGGATAGAGGAGTTACAGGAGGAATATGCGCAATTACAGCGCGAACACAAAGAAAAATGCTCATCGCACGAGCGTCTAAAACGTGAACACGCGTCCTTAGAACGTGAAGTGTCACTCGCGCGGGACGCAGTGCGCGCGCGGGACGCCGCCGCCGCGGCTGCGGGACGCGCCTTTGTGGAggccgccgccgcgcccgaCGCGCCGCCCGGCGACCGCTGCGGCAGCGTGCCGCCGCTGGCGCTCGTGTCGCACACGTCGGAGCAGCTGCTGAACGACGCGGGCGAGGGGACACTAGATGTGCGGCTCGAGCGTCTAGCAAGTGCTAAAGTTGAATTAGAAGGCGAAGTGCGTAAACTCAAGCTGCAGCTAAACGACGAGCGTGCGGCGAGACAAAATGGCGTCGCACATATGCACCGAGATGTTGATGGCGAGTTGGAAACCCTCCGAAAATCGGTATCAGAAGCGAAAGGTCGCGCGGCTCGAGCAGAAGCCGAGGCGGCCATACAAGCGGCGGCGGTCGCGCGTCTGGAGGCACAAGTCGCACGACTAAAGGCCAGGCAGGACCACCAAGACGAGCACGAGGAGATGCTGAAGCAGGAGAGGCGGAAGCTGCAGAGGGAGGCGAGAGAAGCACTAAACCGAGTAGAAGAACTAGAAACAGAAAACAGTCATCTAACAAAACGTCTTGACAAACTGAAGAACGCCAAGTCAGCTCTATTAAAGGACCTGTGA
- Protein Sequence
- MFVPCKNRTRVGSVHRGQVRALVKIRAKLKAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGSRLAALSPSAMHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVSLARDAVRARDAAAAAAGRAFVEAAAAPDAPPGDRCGSVPPLALVSHTSEQLLNDAGEGTLDVRLERLASAKVELEGEVRKLKLQLNDERAARQNGVAHMHRDVDGELETLRKSVSEAKGRAARAEAEAAIQAAAVARLEAQVARLKARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843553;
- 90% Identity
- iTF_01080733;
- 80% Identity
- iTF_00779518;