Hhim007444.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- lrrfip2
- Assembly
- GCA_013421065.1
- Location
- JAATLT010019777.1:39549-58899[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-65 3.8e-61 207.2 14.0 20 264 1 239 1 265 0.88 2 2 1 2e+04 -5.7 14.3 11 162 272 320 262 340 0.44
Sequence Information
- Coding Sequence
- ATGCGAGAGCTAGAACGTCAGCAGAGAGAACAAGAAGACCATGCTGATAAAGCGTACGATATGTACGCAGAAACGGTGGGAAGAAGGACAGGCAGCCGGCTAGCGGCGTTAAGTCCCAGCGCAATGCACTCTCCTCGGCGTAGTTCAGAGGATTCGGACGATGTCCTTAGCATCAAGGACCTTAggcaTGAGCTAAAAGAAGTAGAGGAGAAGTTCCGCAAGGCGATGATCCTTAATGCCCAATTAGACAATGACAAAGCGTCGCTTGGATATCAGCTCGAGTTATTAAAGGATAGGATAGAGGAGTTACAGGAGGAATATGCGCAATTACAGCGCGAACACAAAGAAAAGTGCTCATCGCACGAGCGTCTAAAACGTGAACACGCGTCCTTAGAACGCGAAGTGTCACTCGCGCGGGACGCGGTACGCGCGCGTGACGCCGCCGCCGCGGCTGCGGGACGCGCCTTCGTGGaggccgccgccgcgcccgacGCGCCGCCCGGCGACCGCTGCGGCAGCGTGCCGCCGCTGGCGCTCGTGTCGCACACGTCGGAGCAACTGCTCAATGACGCGGGCGAGGGGACGTTAGATGTGCGGCTCGAGCGTCTAGCAAGTGCTAAAGTTGAATTAGAAGGCGAAGTGCGTAAACTCAAGCTGCAGCTAAACGACGAGCGGGCGGCGAGACAAAACGGCGTCGCGCATATGCACCGAGATGTTGATGGCGAGTTGGAAACCCTCCGTAAATCGGTATCAGAGGCGAAAGGTCGCGCGGCCCGAGCAGAAGCCGAGGCGGCCATACAAGCGGCGGCGGTCGCGCGTCTGGAGGCACAAGTCGCGCGACTAAAGGCCAGGCAGGACCACCAAGACGAGCACGAGGAGATGCTGAAACAGGAGAGGCGGAAGCTGCAGAGGGAGGCGAGAGAAGCACTAAACCGAGTAGAAGAACTAGAAACAGAAAACAGTCATCTAACAAAACGTCTTGACAAACTGAAGAACGCCAAGTCAGCTCTATTAAAGGACCTGTGA
- Protein Sequence
- MRELERQQREQEDHADKAYDMYAETVGRRTGSRLAALSPSAMHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHASLEREVSLARDAVRARDAAAAAAGRAFVEAAAAPDAPPGDRCGSVPPLALVSHTSEQLLNDAGEGTLDVRLERLASAKVELEGEVRKLKLQLNDERAARQNGVAHMHRDVDGELETLRKSVSEAKGRAARAEAEAAIQAAAVARLEAQVARLKARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843553;
- 90% Identity
- iTF_01080733;
- 80% Identity
- iTF_00778024;