Halb001247.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000057.1:48459-55567[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-82 2.1e-78 263.8 13.8 94 299 13 208 5 209 0.99 2 2 0.037 3.7e+02 0.3 3.4 210 242 228 259 211 283 0.55
Sequence Information
- Coding Sequence
- ATGGTCTATGTGAGATCATCATTTGGTGATCAACCGGAAGTCGAAGAACGTTTTCGAAAAGCGATGATAACGAATGCTCAACTGGATAACGACCGCTCATCACAAACCTATGAAGTGAAATTACTAAAGGATAAAAGTGAAACAATGCAAGAATCATTCGCACAACTCCAGCGcgagtttaaaaataaattacgcGATTGCAACAGCCTCAAACGTAACCTGGACCGCACAAcacttgaattaaatttggtGCAGGGCCAGTTAAACGAACGTGATAACCTAATAGCGGAACATGGTCTTGTTATTGTAGCTATTGAGAATACTGATGGAACTGATGCTAAGCGGGCTTTAGTCAGTGTTGAGAACGCCAATATCTTAGCAACTGTGCAGGGTTCTCTTGatgtAAGGCTCAAAAAATTTACCGAGGAAAAGCAGCGGCTTCTTATAGATGTCCAAAAGCTACATGACCAGTTAGATGCCTATAAGACTGAAGGCAGGGCGGGTCGCGGCAGTTCATTAAATGGGTCCTTAAGCTTGGAAGATGATTATGAAGTTCAAAGAGAagccaataaaataatatcagattataaatacaaactcCAAAAGGCTGAACAGGAAATTGCTAGTCTTCAGGCAAGCTTAGCACGTTCTGAGACCCAAGTTATACGGTATAAAAGCACTGCAGAAGCAGCAGAAAAAGCAGAGACAGAATTAAAAGTCGAACGACGTAAGCTGCAACGTGAGCACCGAGAGATTCTGGAGCGTCTAGAAGAAGCAGAGACGGCAAATAACCATTTACTAAAACGccttgaaaaactaaaaaatgcaaagagcACAATCTTAAAGGATTTATGA
- Protein Sequence
- MVYVRSSFGDQPEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMQESFAQLQREFKNKLRDCNSLKRNLDRTTLELNLVQGQLNERDNLIAEHGLVIVAIENTDGTDAKRALVSVENANILATVQGSLDVRLKKFTEEKQRLLIDVQKLHDQLDAYKTEGRAGRGSSLNGSLSLEDDYEVQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAETELKVERRKLQREHREILERLEEAETANNHLLKRLEKLKNAKSTILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550886; iTF_00579272; iTF_00805960; iTF_01323368; iTF_00519154; iTF_00805174; iTF_00575575; iTF_01321912; iTF_01322635; iTF_00473054; iTF_00493640; iTF_00554376; iTF_00541753; iTF_00473053; iTF_01321183;
- 90% Identity
- iTF_00805174;
- 80% Identity
- -