Shsu004735.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000301.1:3319671-3326437[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-77 8.9e-73 245.3 10.6 94 299 31 226 27 227 0.99 2 2 0.19 3.7e+03 -3.0 0.2 198 214 249 265 233 270 0.44
Sequence Information
- Coding Sequence
- ATGCCACCATCTATCTTCCTACCAAGTTTGGTGGCTCTAGCTCAAATACTGTTAAAGATACAGCCGATTCCGAATCTGGCGGGTGGCTGGGAAGTTGAAGAACGCTTTAGAAAAGCAATGATAACGAATGCCCAGCTAGACAACGACAGATCATCTCAAAAATATGAAGTCAAGCTACTAAAAGATAAAGGTGAAACGATGCAGGAAGCTTTTGCACAACTTCAGCGCGAACTTAAAATTAAACTAAGGGATTGTAATGCCCTAAAACGAAACTTGGACCGCACAACACTTGAATTAAACCTTGTACAAGGCCAGCTTAACGAGCGCGATGCATTAATAGCGGAACATGGCCTTATTATTCTTGCCATTGAGAATACTGATGGAAGCGATGCCAAGCGAGCTCTAGTCAGTATTGAAAACGCCAATACCTTAGCGACACTGCAGGGTTCGCTAGATGAAAGACTAAAAAAGCTGACAGGAGAAAAGGAACGGCTTCTTATCGAAATGCAAAATCTACGTGAACAGTTAGATGCTTATAAAAGTGAAGGCCGCGGCGGACGCGGTAATTCATTAAATGGCTCCGTAGGGTATGATGATGATTACGAATTTCAAAGAGAATCAAATAAAATCATATCAGATTATAAATACAAACTGCAAAAAGCTGAACAGGAAATCGCTAGTCTACAGGCAAGTTTATCACGCACGGAGACGCAAGTTATACGATATAAAAGCACGGCAGAAGCAGCTGAAAAAGCAGAGGCAGAACTAAAAGTCGAACGACGGAAGCTGCAACGTGAAGTAGGTACTGGTACCTAG
- Protein Sequence
- MPPSIFLPSLVALAQILLKIQPIPNLAGGWEVEERFRKAMITNAQLDNDRSSQKYEVKLLKDKGETMQEAFAQLQRELKIKLRDCNALKRNLDRTTLELNLVQGQLNERDALIAEHGLIILAIENTDGSDAKRALVSIENANTLATLQGSLDERLKKLTGEKERLLIEMQNLREQLDAYKSEGRGGRGNSLNGSVGYDDDYEFQRESNKIISDYKYKLQKAEQEIASLQASLSRTETQVIRYKSTAEAAEKAEAELKVERRKLQREVGTGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802834;
- 90% Identity
- -
- 80% Identity
- -