Hhis004052.1
Basic Information
- Insect
- Hirtodrosophila histrioides
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_037075165.1
- Location
- JBAMCL010000227.1:90041-95712[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-80 2e-76 257.4 16.3 93 299 18 214 9 215 0.98 2 2 0.63 6.7e+03 -3.7 0.2 214 226 238 249 223 257 0.43
Sequence Information
- Coding Sequence
- ATGCTAATGTCATCATTCGTTGGAAGGAATTTGAAGCTATTTTTAATCCGTAGGGAAGTTGAAGAACGTTTTCGCAAGGCGATGATAACGAACGCACAACTGGACAATGACCGCTCATCACAAACCTATGAAGTAAAATTACTTAAAGATAAAAGTGAAACAATGCAAGAGTCTTTTGCCCAGCTCCAGCGCGAGTTTAAAAGCAAATTGCGCGATTGTAACACCCTTAAACGCAACTTGGACCGCACAACTCTTGAATTGAACCTGGTGCAGGGCCAATTGAACGAGCGTGATGAACTTATATCGGAACATGGTCTTGTTATTGTAGCCATTGAAAATACTGATGGCAGTGATGCCAAGCGGGCTTTAGTCAGTGTTGAAAACGCCAATATCTTGGCAACCGCGCATGGCTCACTTGATGTAAGGCTAAATAAATTCACCGAGGAAAAACAACGGCTTTTACATGAACTACAAAAGATGCATGAACAGTTAGATGCCTACAAAACTGAAGGTAGGGCGGGGCGCGCTAATTCGTTAAATGGCTCCTTGAGttttgatgatgattatgagGTTCAAAGAGaggcaaataaaatcataGCAGATTATAAGTATAAGCTGCAAAAGGCTGAACAAGAAATCGCTAGTCTTCAAGCATGCTTAGCACGATCAGAGACGCAAGTTATACGATATAAAAGCACCGCAGAAGCAGCAGAGAAAGCAGAGGCAGAACTAAAGGTTGAACGGCGCAAGCTGCAACGTGAGTGTCCGTCAATCCTGGTCGTCATGAGCGGTGGGTTTCCAGGGTAG
- Protein Sequence
- MLMSSFVGRNLKLFLIRREVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMQESFAQLQREFKSKLRDCNTLKRNLDRTTLELNLVQGQLNERDELISEHGLVIVAIENTDGSDAKRALVSVENANILATAHGSLDVRLNKFTEEKQRLLHELQKMHEQLDAYKTEGRAGRANSLNGSLSFDDDYEVQREANKIIADYKYKLQKAEQEIASLQACLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRECPSILVVMSGGFPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802834;
- 90% Identity
- iTF_00802834;
- 80% Identity
- -