Dmea015636.1
Basic Information
- Insect
- Drosophila melanica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_004143765.1
- Location
- SCDT01004317.1:5946-6793[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-79 2.4e-75 253.8 10.8 91 299 5 203 4 204 0.98
Sequence Information
- Coding Sequence
- atgtgtttattttcatcGAAGGAAGTCGAAGAACGTTTTCGAAAAGCGATGATAACAAATGCCCAGTTAGACAACGATCGCTCATCTCAAACCTATGAAGTCAAGTTACTGAAAGACAAAAGTGAAACAATGCAAGAAACTTTTGCGCAGCTGCAACgggaatttaaaaacaaacttcgCGATTGTAATACCTTAAAGCGCAATTTAGATCGCacaacaattgaattgaatctAGTTAAAGGACAGTTAAGCGAGCGGGATGCTTTAATAGCAGAACACGGTCTTGTTATTGTAGCCATTGAGAATTCTGATGGTAGTGATGCCAAGCGGGCACTTGTCAGTGCTGAAAACGCCAATACCTTGGCTACCGTGCAGGGTTCGCTTGATGTAAGACTTAAAAAGTTTGCAGATGAAAAACAGTGGCTTTTGattgaaatgcaaaagctGCGCGATCAACTTGATACTTATAAAAGTGAAGGCGGAATTAATCGCGGGAGTTTATTGTATGGCTCTCTTGGGAATGTTGATGACTACGAGGTTCAAAGAGAATCAAACAAAATCATATCagattacaaatacaaactgCAAAAGGCTGAAGCGGAAATCGCTGGTCTCCAAGCAAACCTAGCACGATCTGAAACACAAGTTATACGTTATAAAAGCACGGCAGAAGCAGCCGAAAAAGCGGAAGCTGAACTGAAAGTCGAACGACGTAAACTACAACGTGAG
- Protein Sequence
- MCLFSSKEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKSETMQETFAQLQREFKNKLRDCNTLKRNLDRTTIELNLVKGQLSERDALIAEHGLVIVAIENSDGSDAKRALVSAENANTLATVQGSLDVRLKKFADEKQWLLIEMQKLRDQLDTYKSEGGINRGSLLYGSLGNVDDYEVQRESNKIISDYKYKLQKAEAEIAGLQANLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802834;
- 90% Identity
- -
- 80% Identity
- -