Dnav009821.1
Basic Information
- Insect
- Drosophila navojoa
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001654015.2
- Location
- NW:744-1615[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-74 1.2e-69 234.4 11.8 103 299 1 187 1 188 0.99
Sequence Information
- Coding Sequence
- ATGATAACGAATGCTCAACTTGACAACGACCGTTCATCACAGACCTATGAGGTTAAACTACTTAAAGATAAAAGTGAAGCAATGCAAGAATCCCTTGCCCAATTGCAACgtgaatttaaaaacaaacttcGCGATTGTAGTGCCCTTAAGCGCAGCTTAGATCGTACAACCCTAGAATTAAACCTGGTGCAAGGCCAACTTAGTGAGCGTGATACTCTTATAGAAGAACACggtcttgttattgttgctattgaaaATAGTGATGGCAGCGATGCGAAGCGTGCTCTAGTCACCGTGGAAAATGCCAATGTATTAGCAACTGTGCAAGGCTCTCTTGacGTACGAATCAAAAAGTTTGCTGATGAAAAACAACGACTTcttaatgaaatgcaaaagctCCGTGAACAGCTGGACGCTTTTAAAAATGAAGGAAGACCTGTTCGAGGAAGTCTATTAAGTGGATCTTTAGGGTACGATGGTGACTATGATGCTCAGCgagaatcaaataaaatcatatccgactataaatataaactacaGAAAGCTGAACAGGAAATCGCCAGTCTGCAGGCAAACCTAGCGCGCTCAGAGACTCAAGTTATACGTTACAAAAGTACGGCTGAAGCTGCCGAAAAATCTGAGGCTGAGCTTAAAGTAGAAAGACGTAAGCTGCAACGTGAGGTATGA
- Protein Sequence
- MITNAQLDNDRSSQTYEVKLLKDKSEAMQESLAQLQREFKNKLRDCSALKRSLDRTTLELNLVQGQLSERDTLIEEHGLVIVAIENSDGSDAKRALVTVENANVLATVQGSLDVRIKKFADEKQRLLNEMQKLREQLDAFKNEGRPVRGSLLSGSLGYDGDYDAQRESNKIISDYKYKLQKAEQEIASLQANLARSETQVIRYKSTAEAAEKSEAELKVERRKLQREV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802834;
- 90% Identity
- iTF_00473054;
- 80% Identity
- -