Sgra003795.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000133.1:475285-480222[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-78 1.8e-74 250.6 11.5 94 299 2 197 1 198 0.99 2 2 0.38 2.9e+03 -3.0 0.5 216 227 223 233 202 241 0.44
Sequence Information
- Coding Sequence
- ATGGACGTTGAAGAACGCTTTAGAAAAGCAATGATAACGAATGCCCAGCTAGACAACGACCGCTCATCTCAAACCTATGAAGTCAAGCTTCTTAAAGATAAAGATGAAACGATGCAGGAGGCTTTTGCACAACTTCAGCGCGAACTTAAAAATAAATTAAGGGATTGCAATGCCCTTAAACGAAACTTGGACCGCACAACACTTGAATTGAACCTGGTACAAGGCCAGCTAAGCGAACGCGATTCATTAATAGCAGAACATGGCCTTGTTATTGTTGCTATTGAAAATACTGATGGTAGTGATGCCAAGCGGGCTCTAGTCAGTATTGAAAACGCAAATACTTTGGCGACAGTGCAAGGTTCGCTAGATGTAAGACTAAAAAAGCTGGCAGGAGAGAAGGAACGGCTTTTAATCGAAACGCAAAATCTGCGTGAACAGTTAGATGCGTATAAAAGTGACGGCCGAGGTGGGCGCGGTTGTTCATTTAATGGGTCCGTGGGTTATGAAGATGATTACGAACTTCAAAGAGAAGCAAATAAAATCATATCAGATTATAAATACAAACTGCAAAAAGCTGAACAGGAAACCGCATGTCTTCAGGCAAGTTTATCACGCTCGGAGACGCAAGTTATACGATATAAAAGCACGGCAGAAGCAGCCGAAAAAGCCGAGGCAGAACTAAAAGTCGAACGACGGAAACTGCAACGTGAAGTAAGAAGAAATACAATCTAA
- Protein Sequence
- MDVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKDETMQEAFAQLQRELKNKLRDCNALKRNLDRTTLELNLVQGQLSERDSLIAEHGLVIVAIENTDGSDAKRALVSIENANTLATVQGSLDVRLKKLAGEKERLLIETQNLREQLDAYKSDGRGGRGCSFNGSVGYEDDYELQREANKIISDYKYKLQKAEQETACLQASLSRSETQVIRYKSTAEAAEKAEAELKVERRKLQREVRRNTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802834;
- 90% Identity
- iTF_01321912;
- 80% Identity
- -