Scyr002407.1
Basic Information
- Insect
- Scaptomyza cyrtandrae
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_035044605.1
- Location
- JAWNNS010000219.1:34849-43895[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-78 1.5e-74 251.0 8.4 88 299 20 220 12 221 0.97 2 2 0.057 3.6e+02 0.3 3.4 210 241 240 270 222 295 0.55
Sequence Information
- Coding Sequence
- atgaaggataagaaggcacctggtTCGGATGGAATACCGAATGAGGCTTTGAAGCTGGTCTACCATCAGAACCCAGAAGTTGAAGAACGCTTTAGAAAAGCAATGATAACAAACGCGCAGCTAGACAACGACCGCTCATCGCAAACCTATGAAGTCAAGCTTCTTAAAGATAAAGGTGAAACGATGCAGGAggcttttgcacaacttcagcGCGAACTTAGAAATAAATTGAGGGATTGTAATGCCCTAAAACGAAACTTAGATCGCACAACACTTGAATTGAACCTGGTACAAGGCCAGCTTACCGAACGCGATTCCTTAATAGCCGAACATGGCCTTGTcattgttgcttttgaaaaTACTGATGGGAGTGATGCAAAGCGGTCTCTAGTCAGTATTGAAAACGCAAATACCTTGGCGACAGTGCAGGGTTCGTTGGATATAAGACTAAAAAAGCTGGCAGGAGAAAAGGAAAGGCTTGTTATCGAAATGCAAAATCTGCGTGAACAGTTAGATGCATACAAAAGTGAAGGCCGCGGTGGACGCGGTAGTTCATTAAATGGTCCCTTAGGTTATGATGATTACGAACTTCaaaGAGaatcaaacaaaatcataTCAGATTATAAATACAAACTGCAAAAAGCTGAACAGGAAATCGCATGTCTTCAGGCAAGCTTATCACGCTCGGAGACGCAAGTTATACGATATAAAAGCACGGCAGAAGCAGCCGAAAAAGCAGAGGCAGAACTAAAAGTCGAACGCCGGAAACTGCAACGTGAACACCGAGAGATTCTGGAACGGTTGGAAGAATCGGAAACCGCGAATAGCCATCTACTAAAACGTCTTGATAAATTGAAGAATGCAAAGAGCGCAATTTTGAAGGACTTATGA
- Protein Sequence
- MKDKKAPGSDGIPNEALKLVYHQNPEVEERFRKAMITNAQLDNDRSSQTYEVKLLKDKGETMQEAFAQLQRELRNKLRDCNALKRNLDRTTLELNLVQGQLTERDSLIAEHGLVIVAFENTDGSDAKRSLVSIENANTLATVQGSLDIRLKKLAGEKERLVIEMQNLREQLDAYKSEGRGGRGSSLNGPLGYDDYELQRESNKIISDYKYKLQKAEQEIACLQASLSRSETQVIRYKSTAEAAEKAEAELKVERRKLQREHREILERLEESETANSHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802834;
- 90% Identity
- iTF_01321912;
- 80% Identity
- -