Dlow007880.1
Basic Information
- Insect
- Drosophila lowei
- Gene Symbol
- -
- Assembly
- GCA_008121275.1
- Location
- CM017778.1:9668463-9676050[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.2e-12 1.9e-08 33.8 0.0 1 40 675 715 675 718 0.90 2 4 5.1e-14 1e-10 41.0 0.1 2 39 730 767 729 770 0.94 3 4 1.2e-17 2.4e-14 52.6 0.0 1 45 784 829 784 829 0.98 4 4 1.2e-19 2.4e-16 59.0 0.0 1 43 836 879 836 880 0.97
Sequence Information
- Coding Sequence
- atggtaaatgaaatgaaattacTGGGGTACATAGGGGGTGGGGGTAAGTCCTCCACAGGACAGCGGCagggtctggggctggggctggggctgggaaaGGCGACTGTGGCCGGGATGGGGGATGGCCTCTTGCGCACCGCCGAACAATTGAAGATCAAAGGCCTCTGCGAGACAGCGGAAAACGCGGATGACTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATCCAGCAGGCGGTCGTGGGGAGCATCGTCAATCCCAGCATAGTGTCGGGGGGAGCAACATCGCCCCCgctcgagcagcagcagcagcaccaccaccagcaccaccaacaacagGCCCAAGCACAGGCCCAGGCGCAGGCTCACCAGCAGgagcaacaccagcaacagcaggcgcAGCAGGCGCAGGTGCAtgcccagcagcaacagcaacaaatcaACGCCTTGCTGACGCACCACGGAGTGGCCAGTGGCAGTGCATCTTTGGGCGGACAGCTGCTCAGCACGACAGCGAGTGGGAGCAGCGGCAACGGAGCAGGCAGCCTGCAGTCGCAACCCGGGCTACAGCCGACGACGCGCAAGTCGAGACTCAAGCGATCTAAGTCTCCGGATCTGCAGTTGGGCGGAGGCAgcgccagcggcagcagcagcgtctcccagcagccacagccggcCCATCACCACTCGCAGACGCTGCTTCTACAgggccagagtcagagccagagccagacctcCATTGTGAGCCTACAGCAGACGGCCGAGGGCAATTATATACCCGTGCCGGGAACCGGTGACGAGTCGGACGTGGACCACGAACACGATCACGATCACGACCACTCCCACGATCACTCACACAATCTCTCACACTCCCACGACCACGATCACGACCACGAGCACGGCCACGAGCACGAGAACAGGCCGAGCAAAATCTGCAAGACAGAGCAATCCCTGGCCTCGCCGTCGTCCAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACTGCAGCAGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgACTAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAGCACGTCGATCTGTCGTGCAACCCCAGTACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATCCATCGACTCGATCAATCTCCCATGCATTCGATAGCCCATCACCATACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAGCATTTGGCGGCTGCCCAGCAGCATGCGATCTCccaggcccagcagcagcatgcccATCATCAggcccaacagcagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAGAGtcaggcccagcagcagcagcagcaacagcagcaacagcagcagcagcatcaacagcagcagcagcagcaacagcagcatcaccagcagcagcagcaggcggcggcagcggcagccgcagcagctgTACACGCTCAGCATGGTGGGCATGTGACGCACGCGGAGATGAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAGATAAAGCACGAGCCGGGGATGATTATAACGCCGGAGATTGTCAACATGATGTCCTCAGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCGAACGGTTCGCCGCACGATCAGAAGGAGCCGCACTACACGAACTTGGATCAGCAGcacggaggaggaggagggctGGGCGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcaTGGGTGGTggggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGCCAAATATCCGCCAATAAGGCGTCCAAAGCCTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGTGAGGGGATCCGCCTGGCGGCGCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACACCATGGTCCGAAGATGCCATGAACGAGGCCCTCAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAGTACGACGTGGTGGCCAACACTAGTGGCGTCTCGCTGCTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCCCAGCATCATAGTACGCCGCAGCATCACAGCTCGTCCCAGGGGCCGCCCACGCCGCAGCACATGCAACAGCATGTGGTGCAtatgcagcaacagcagtcgcCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTCACGTCAAGCAGCCAGGTGGTGCAtagccaacagcaacaacagcagcagcagcagcagcttcagcagaTCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MVNEMKLLGYIGGGGKSSTGQRQGLGLGLGLGKATVAGMGDGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVSGGATSPPLEQQQQHHHQHHQQQAQAQAQAQAHQQEQHQQQQAQQAQVHAQQQQQQINALLTHHGVASGSASLGGQLLSTTASGSSGNGAGSLQSQPGLQPTTRKSRLKRSKSPDLQLGGGSASGSSSVSQQPQPAHHHSQTLLLQGQSQSQSQTSIVSLQQTAEGNYIPVPGTGDESDVDHEHDHDHDHSHDHSHNLSHSHDHDHDHEHGHEHENRPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAISQAQQQHAHHQAQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQQHQQQQQQQQQHHQQQQQAAAAAAAAAVHAQHGGHVTHAEMSGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGGGLGGSVCGPGGAGGGGGMGGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00473901;
- 90% Identity
- iTF_00563820; iTF_00564007; iTF_00471533; iTF_00473901; iTF_00473700; iTF_00480783; iTF_00480942; iTF_00601138; iTF_00600975; iTF_00574904; iTF_00574730; iTF_00580633; iTF_00580824; iTF_00514973; iTF_00514810; iTF_00517630; iTF_00603264;
- 80% Identity
- -