Basic Information

Insect: Drosophila obscura
Gene Symbol: lolal
Assembly: GCA_018151105.1
Location: NW:2599945-2647374[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.7e-09 8.5e-06 25.1 0.0 16 40 732 758 728 761 0.84

2 4 5.3e-14 9.6e-11 40.9 0.1 2 39 773 810 772 813 0.94

3 4 1.2e-17 2.2e-14 52.5 0.0 1 45 827 872 827 872 0.98

4 4 1.3e-19 2.3e-16 58.9 0.0 1 43 879 922 879 923 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.7e-09	8.5e-06	25.1	0.0	16	40	732	758	728	761	0.84
2	4	5.3e-14	9.6e-11	40.9	0.1	2	39	773	810	772	813	0.94
3	4	1.2e-17	2.2e-14	52.5	0.0	1	45	827	872	827	872	0.98
4	4	1.3e-19	2.3e-16	58.9	0.0	1	43	879	922	879	923	0.97

Sequence Information

Coding Sequence: ATGGCTGCCGTACGAGGACATCAGTACTTTAGCCTGCGATGGAACAACTACCAGAACACGATGACATCCGTGTTCCAGCAACTGCGCGAAGATCTCTCCTTTGTCGATGTGACCTTGTCCTGCGAACACGGATCCCTTAAGGCACACAAGGTCGTCCTCTCCGCCTGCTCGACATACTTTCAGAAGCTTCTGCTGGAGAACCCATGCAAACATCCAACAATCATCCTACCCGCcgatatcatattcacagatCTGAAAACAATCATCGATTTTGTCTACCGCGGTGAGATCGATGTCACCGAATCGGAACTACAGggcCTCTTGCGCACCGCCGAACAACTGAAGATCAAGGGCCTCTGCGAGACAGCGGAAAACGCGGATGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATCCAGCAGGCGGTCGTGGGGAGCATTGTGAATCCCAGCATAGTGCCAGGGGGAGCAGCCTCGCCCTCgctcgagcagcagcaccatcagcACCACCAACAGGCCCAAGCACAGGCCCAGGCTCAGGCCCACCAGCAggagcaacaccagcagcagcagcaacagcagcaacagcaacagcagcaggtgcatgcccagcagcaggtacatgcccagcagcagcaacagcaacaaatcaACGCCTTGCTGACGCAGCACGGAGTGGCCAGTGGCAGCGTACCTTTGGGCGGACAGCTGCTAAGCACGACAGCGAGTgggagcagcggcagtggaGCAGGCAGTCTCCAGTCGCATTCCGGGCTCCAGCCGACGACGCGCAAGTCGCGACTCAAGCGGTCCAAGTCTCCGGATCTGCAGTTGAGCGGAGGCAACGgtaacggcagcagcagcagcgtatcccagcagccacagccggcCCATCACCACTCGCAGACGCTGCTCATTCAGGGCCAGAACCAGACCTCCATTGTGAGCCTACAGCAAACGGCCGAGGGCAATTATATACCCGTGCCGGGCACCGGTGACGAGTCGGACGTGGATCACGATCACGATCAGGATCACGATCACGACCACTCCCACGATCACTCTCACAACCTATCACACTCCCACGACCACGATCACGAGCACGAGAGCAAGCCGAGCAAGATCTGCAAGACAGAGCAATCGCTCGCCTCGCCGTCGTCTAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACCTCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTTACGGAGCACGTCGACCTCTCGTGCAACCCCAGTACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATCCATCGACTCGATCAATCTCCCATGCATTCGATAGCCCATCATCACACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAGCACCTGGCTGCTGCACAGCAGCATGCGATCTCccacgcccagcagcagcatgcccATCATCaggcccagcaacagcagcagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAGAGCcaggctcagcagcagcagcagcagcaacaacaacagcagcagcagcatcagcaacagcaacagcagcagcatcaccagcaacagcagcaggcggcggcagcggccgcGGCAGCTGTGCACGCCCAGCATGGTGGGCATGTGTCGCACGCGGAAATCAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAAATCAAGCACGAGCCTGGTATGATAATAACGCCGGAGATTGTCAATATGATGTCCTCAGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAATGGCTCGCCGCACGATCAGAAGGAGCCGCACTACACGAACTTGGATCAGCAGCATGGAGGCGGGCTGGGTGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcaTGGGTGGTggggctggctctggctctggcgaGAAAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGCCAGATATCCGCCAATAAGGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGTGAGGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCACCAACCACATGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACTCCATGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCAGTGCGGGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAGTACGATGTGGTGGCCAACACTAGCGGCGTGTCGCTGATGAACACCTCGGGCAACACCACGGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGttGCATATGTTGCAGCAACAGTTCCCGTACAGTCCATCGCCGCATCCGCCAACGCCCCAGCATCATAGCACACCGCAGCATCACAGCTCGTCCCAGGGGCCGCCAACGCCGCAGCATATGCAACAGCATGTGGTGCacatgcagcaacagcaatcgCCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCAAGCAGCCAGGTGGTGCAtagccaacaacagcaacagcaacagcaacagcagcagcttcagcagaTCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
Protein Sequence: MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVPGGAASPSLEQQHHQHHQQAQAQAQAQAHQQEQHQQQQQQQQQQQQQVHAQQQVHAQQQQQQQINALLTQHGVASGSVPLGGQLLSTTASGSSGSGAGSLQSHSGLQPTTRKSRLKRSKSPDLQLSGGNGNGSSSSVSQQPQPAHHHSQTLLIQGQNQTSIVSLQQTAEGNYIPVPGTGDESDVDHDHDQDHDHDHSHDHSHNLSHSHDHDHEHESKPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTSAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAISHAQQQHAHHQAQQQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQQHQQQQQQQHHQQQQQAAAAAAAAVHAQHGGHVSHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGLGGSVCGPGGAGGGGGMGGGAGSGSGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00473901;
90% Identity: iTF_00535963;
80% Identity: iTF_00564007;