Dsub004637.3
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- -
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001098.1:3146835-3154576[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-10 1e-06 28.4 0.0 7 40 639 673 638 676 0.87 2 4 7.3e-14 1.2e-10 41.1 0.1 2 39 688 725 687 728 0.94 3 4 1.7e-17 2.7e-14 52.7 0.0 1 45 742 787 742 787 0.98 4 4 1.7e-19 2.8e-16 59.1 0.0 1 43 794 837 794 838 0.97
Sequence Information
- Coding Sequence
- ATGTGGGCCAGCATCCTGGGTTGCCCATTTGCCAACTGGGCTGGCCTCTTGCGCACCGCCGAACAACTGAAGATCAAAGGCCTCTGCGAGACAGCGGAAAACGCGGATGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATACAGCAGGCGGTCGTGGGTAGCATTGTGAATCCCAGCATAGTGCCAGGGGGAGCAGCCTCGCCCTCGCTTgaacagcagcaccatcagcaCCACCAACAGGCCCAAGCACAGGCCCAGGCTCAGGCCcaccagcaggagcaacaccagcagcagcagcaacagcagcagcagcagcagcagcaacaacagcagcagcaacagcagcaggtgcatgcccagcagcagcaacagcaacaaatcaaCGCCTTGTTGACGCAGCACGGAGTGGCCAGTGGCAGCGTACCTTTGGGCGGACAGCTGCTTAGCACGACAGCGAGTgggagcagcggcagtggaGCAGGCAGTCTCCAGTCGCAGTCCGGGCTCCAGCCGACGACGCGCAAGTCGCGACTCAAGCGATCCAAGTCTCCGGATCTGCAGTTGGGCggaggcagcggcaacggcaacggcagcagcgtatcccagcagccacagccggcCCATCACCACTCGCAGACGCTGCTCATTCAGGGCCAGAACCAGACCTCCATTGTGAGCCTACAGCAGACGGCCGAGGGCAATTATATACCCGTGCCGGGCACCGGTGACGAGTCGGACGTGGATCACGAACACGATCACGATCACGACCACTCCCACGATCACTCTCACAATCTATCACACTcccacgaccacgaccacgagCACGATCACGAGCACGAGAGCAAGCCGAGCAAGATCTGCAAGACAGAGCAATCGCTCGCCTCGCCGTCGTCCAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACCTCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACACCAGTCACCGTTACGGAGCACGTCGACCTCTCGTGCAACCCCAGTACGGACACACGCGATCTATCAAATCCCACCGAACCCCTCGACATTGACAATCACCTGGCGCAGCAGATACATCGACTCGATCAATCTCCCATGCATTCGATAGCCCATCATCACACCGGGGACGAGAGCAACTCGAACCTGGTGCACATCAAGAGCGAGGTGATCGATGCCAAGCACCTGGCGGCTGCACAGCAGCATGCGATCTCccacgcccagcagcagcatgcccATCATCAggcccagcaacagcagcagcagcagcagcacctccatGCCCAGCAGCTGATGGCCCAGAGCcaggctcagcagcagcagcagcagcagcagcagcaacaacaacagcagcagcagcatcagcaacagcagcagcatcaccagcagcagcagcaacagcaggcggcggcagcggcagctgtgcACGCTCAGCATGGTGGGCATGTGTCGCACGCGGAGATCAGCGGGGCAACTGTCATGGAGATTGATCCGAGCCAAATCAAGCACGAGCCTGGGATGATTATAACGCCGGAGATTGTCAATATGATGTCCTCGGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCAAATGGCTCGCCGCACGATCAGAAGGAGCCGCACTACACGAACTTGGATCAGCAGCATGGAGGCGGGCTGGGTGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcatGGGTGGTggggctggctctggctctggcgaGAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCATGGAACGAGGATGCCCTGCAGAATGCCTTGGAGGCGTTGCGCTCGGGCCAGATATCCGCCAATAAGGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGTGAGGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCACCAACCACATGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACACCATGGTCCGAGGATGCCATGAACGAGGCCCTCAATTCAGTGCGGGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAGTACGATGTGGTGGCCAACACTAGCGGCGTGTCGCTGATGAACACCTCGGGCAATACCACGGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGttGCATATGTTGCAGCAACAGTTCCCGTACAGTCCATCGCCGCATCCGCCAACGCCCCAGCATCATAGCACACCGCAGCATCACAGCTCGTCCCAGGGGCCGCCAACGCCGCAGCATATGCAACAGCATGTGGTGCacatgcagcaacagcaatcgcCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCAAGCAGCCAGGTGGTGCAtagccaacaacagcaacagcagcaacaacagcagcagcagcagcagcttcagcagaTCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MWASILGCPFANWAGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVPGGAASPSLEQQHHQHHQQAQAQAQAQAHQQEQHQQQQQQQQQQQQQQQQQQQQQVHAQQQQQQQINALLTQHGVASGSVPLGGQLLSTTASGSSGSGAGSLQSQSGLQPTTRKSRLKRSKSPDLQLGGGSGNGNGSSVSQQPQPAHHHSQTLLIQGQNQTSIVSLQQTAEGNYIPVPGTGDESDVDHEHDHDHDHSHDHSHNLSHSHDHDHEHDHEHESKPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTSAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVHIKSEVIDAKHLAAAQQHAISHAQQQHAHHQAQQQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQQQQQHQQQQQHHQQQQQQQAAAAAAVHAQHGGHVSHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGLGGSVCGPGGAGGGGGMGGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00473901;
- 90% Identity
- iTF_00535963;
- 80% Identity
- -