Daff002239.3
Basic Information
- Insect
- Drosophila affinis
- Gene Symbol
- -
- Assembly
- GCA_037356375.1
- Location
- CM074799.1:16495503-16499525[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.1e-10 1.1e-06 28.5 0.0 7 40 615 649 614 652 0.87 2 4 5.8e-14 1.3e-10 41.1 0.1 2 39 664 701 663 704 0.94 3 4 1.4e-17 3.1e-14 52.7 0.0 1 45 718 763 718 763 0.98 4 4 1.4e-19 3.1e-16 59.1 0.0 1 43 770 813 770 814 0.97
Sequence Information
- Coding Sequence
- ATGGGCCTCTTGCGCACCGCCGAACAATTGAAGATCAAAGGGCTCTGCGAGACAGCGGAAAACGCTGATGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATACAGCAGGCGGTCGTGGGGAGCATCGTCAATCCCAGCATAGTGCCGGGGGGAGCACCATCGCCCTCgctcgagcagcagcaccaccagcaccaccaacaacagGCCCAAGCACAGGCCCACCAGCAGgagcaacaccagcaacaacagcagcaacagcaacagcagcaggtgcatgtccagcagcagcagcaacagcaacaaatcaaCGCCTTGTTGACGCAGCACGGTGTGGCCAGTGGCGGTGCATCGTTGGGCGGACAGCTGCTCAGCACGACAGCGAGTGGGAGTAGCGGTAGCGGAGCAGGCGGCCTGCAGGCGCCATCCGGGCTGCAGCCGACGACGCGCAAGTCGCGACTCAAGCGCTCCAAGTCTCCGGACCTGCAATTGGGcggaagcggcagcagcagcgtctcccagcagccacagccggcCCATCACCACGCGCAGACGCTGCTTCtgcagggccagagccagacctcCATTGTGAGCCTACAGCAGACGGCCGAGGGCAATTACATACCCGTGCCGGGCACCGGTGACGAGTCGGACGTGGACCACGAACACGATCACGATCACGATCACGACCACTCCCACGATCACTCCCACAATCTCTCACACCcccacgaccacgaccacgaaCACGGCCACGAGCACGAGAACAGGCCGAGCAAAATCTGCAAGACAGAGCAGTCCCTGGCCTCGCCATCGTCGAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACTGCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgACTAGTTTAGGCATGGGCATGAACGGAGGCCTACTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAGCACGTCGATCTGTCGTGCAACCCCAGCACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATCCATCGACTCGATCAATCTCCCATGCATTCGATAGCCCACCACCATACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAACATTTGGCGGCTGCCCAGCAGCATGCGATCTCccaggcccagcagcagcatgcccatcatcaagcccaacaacagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAGAGTCAggcccagcagcaacagcaacaacagcagcagcagcaacaacatcaacaacagcagcagcagcagcagcaacagcagcatcaccagcaacagcaagcggcggcagcggcagccgcagcagctgtACACGCTCAGCATGGTGGGCATGTGACGCACGCGGAGATGAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAGATTAAGCACGAGCCGGGCATGATTATAACGCCGGAGATTGTCAATATGATGTCCTCAGGTCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAACGGTTCGCCGCACGATCAGAAGGAGCCGCACTACACGAACTTGGATCAGCAgcatggaggaggaggagggctgGGCGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcatGGGTGGTggggctggctctggctctggcgaGAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGCCAAATATCCGCCAATAAGGCGTCCAAAGCTTTTGGCATACCCTCATCGACGCTCTACAAGATAGCTCGTCGTGAGGGTATCCGCCTGGCGGCGCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACACCATGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGGGGCAAGTACGATGTGGTGGCCAACACTAGTGGCGTGTCGCTGCTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCCCAGCATCATAGCACACCGCAGCATCACAGCTCGTCCCAGGGACCGCCAACGCCGCAGCATATGCAACAGCATGTGGTGCAtatgcagcaacagcaatcgCCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCGAGCAGCCAGGTGGTGCAtagccaacagcaacagcagcagcagcagcttcagcagATCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVPGGAPSPSLEQQHHQHHQQQAQAQAHQQEQHQQQQQQQQQQQVHVQQQQQQQQINALLTQHGVASGGASLGGQLLSTTASGSSGSGAGGLQAPSGLQPTTRKSRLKRSKSPDLQLGGSGSSSVSQQPQPAHHHAQTLLLQGQSQTSIVSLQQTAEGNYIPVPGTGDESDVDHEHDHDHDHDHSHDHSHNLSHPHDHDHEHGHEHENRPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAISQAQQQHAHHQAQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQHQQQQQQQQQQQHHQQQQAAAAAAAAAVHAQHGGHVTHAEMSGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGGGLGGSVCGPGGAGGGGGMGGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00473901;
- 90% Identity
- iTF_00535963;
- 80% Identity
- -