Dalg004712.3
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- br
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010000899.1:616538-662864[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6e-10 1.2e-06 28.3 0.0 7 40 763 797 762 800 0.87 2 4 6.9e-14 1.4e-10 40.9 0.1 2 39 812 849 811 852 0.94 3 4 1.6e-17 3.3e-14 52.5 0.0 1 45 866 911 866 911 0.98 4 4 1.6e-19 3.3e-16 58.9 0.0 1 43 918 961 918 962 0.97
Sequence Information
- Coding Sequence
- atggCTGCTGTACGTGGACATCAGTACTTTAGTCTGCGATGGAACAACTACCAGAACACGATGACATCCGTGTTCCAGCAACTGCGCGAAGATCTCTCCTTTGTCGATGTGACCTTGTCCTGCGAACACGGATCCCTCAAGGCACACAAGGTCGTCCTCTCCGCCTGTTCGACGTACTTTCAAAAGCTTCTGCTCGAGAATCCATGCAAACATCCAACAATCATCCTACCCGCCGATATCATATTCACAGATCTGAAAACAATCATCGATTTTGTCTACCGCGGTGAGATCGATGTCACCGAATCGGAACTACAGACCACTGGGCCCCCAGCCCGCACCCATAGCGAGTCCTCCATGtcgacgacgacagcagcagcacagagtCCGCAGTCCGCAGTCCACAATCCGCAGCGCCAAGCCACATCCAACCAGGCGGGGAACAGGAGACcgtcggaggaggagcaggagcaggagcaggagcagcagcatgagGATGAGTCGCGACTCACTGGCAACATCCCTGGCCTCTTGCGCACCGCCGAACAATTGAAGATCAAAGGCCTCTGCGAGACAGCGGAAAACGCTGATGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATACAGCAGGCGGTCGTGGGGAGCATCGTCAATCCCAGCATAGTGCCGGGGGGAGCACCGTCGCCCTCgctcgagcagcagcaccaccagcaccaccaacaacagGCCCAAGCACAGGCCCAGGCTCAGGCCcaccagcaggagcaacaccagcaacaacagcagcagcaacagcagcagcagcaggtgcatgcccagcagcagcagcaacagcagcaaatcaACGCCTTGTTGACGCAGCACGGTGTGGCCAGCGGCAGTGCATCGTTGGGCGGACAGCTGCTCAGCACGACAGCGAGTGGGAGTAGCGGTAGCGGAGCAGGCGGCCTGCAGGCGCAATCCGGGCTGCAGCCGACGACGCGCAAGTCGCGCCTCAAGCGCTCCAAGTCTCCGGATCTGCAATTGGGcggaagcggcagcagcaacgtctcccagcagccacagccggcCCATCACCACTCGCAGACGCTGCTTCtgcagggccagagccagacctcCATTGTGAGCCTACAGCAAACGGCCGAGGGCAATTATATACCCGTGCCGGGCACCGGTGACGAGTCGGACCACGAGAACAGGCCGAGCAAAATCTGCAAGACAGAGCAGTCCCTGGCCTCGCCATCGTCCAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACAGCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAGCACGTCGATCTGTCGTGCAACCCCAGTACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATCCATCGACTCGATCAATCTCCCATGCATTCGATAGCCCACCACCATACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAACATTTGGCGGCTGCCCAGCAGCATGCGATCTcccaggcccagcagcagcatgcccatcatcaagcccaacagcagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAGAGTcaggcccagcagcaacagcaacaacagcagcagcagcagcagcaacaacatcaacagcagcagcagcagcagcaacagcaacagcagcatcaccagcaacagcaggcggcggcagcggcagccgcagcagctgtACACGCTCAGCATGGTGGGCATGTGACGCACGCGGAGATGAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAGATTAAGCACGAGCCGGGCATGATTATAACGCCGGAGATTGTCAATATGATGTCCTCAGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAACGGTTCGCCGCACGATCAGAAGGAGCCGCACTACACAAACTTGGATCAGCagcatggaggaggaggaggagggctgGGCGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcatGGGTGGTggggctggctctggctctggcgagAAAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGCCAAATATCCGCCAATAAGGCGTCCAAAGCTTTTGGCATACCCTCATCGACGCTCTACAAGATAGCTCGTCGTGAGGGTATCCGCCTGGCGGCGCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACACCATGGTCTGAGGATGCCATGAACGAGGCCCTCAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGGGGCAAGTACGATGTGGTGGCCAACACTAGTGGCGTGTCGCTGCTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCCCAGCATCATAGCACACCGCAGCATCACAGCTCGTCCCAGGGGCCGCCAACGCCGCAGCATATGCAACAGCATGTGGTGCatatgcagcaacagcaatcgcCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCGAGCAGCCAGGTGGTGCatagccaacagcaacagcagcagcagcagcttcagcagaTCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQTTGPPARTHSESSMSTTTAAAQSPQSAVHNPQRQATSNQAGNRRPSEEEQEQEQEQQHEDESRLTGNIPGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVPGGAPSPSLEQQHHQHHQQQAQAQAQAQAHQQEQHQQQQQQQQQQQQVHAQQQQQQQQINALLTQHGVASGSASLGGQLLSTTASGSSGSGAGGLQAQSGLQPTTRKSRLKRSKSPDLQLGGSGSSNVSQQPQPAHHHSQTLLLQGQSQTSIVSLQQTAEGNYIPVPGTGDESDHENRPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAISQAQQQHAHHQAQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQQQHQQQQQQQQQQQQHHQQQQAAAAAAAAAVHAQHGGHVTHAEMSGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGGGGLGGSVCGPGGAGGGGGMGGGAGSGSGEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00473901;
- 90% Identity
- iTF_00535963;
- 80% Identity
- iTF_00473901;