Dath014092.1
Basic Information
- Insect
- Drosophila athabasca
- Gene Symbol
- lolal
- Assembly
- GCA_008121215.1
- Location
- VMQQ01000020.1:5507890-5562572[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-09 8.8e-06 25.1 0.0 16 40 733 759 729 762 0.84 2 4 4.6e-14 9.9e-11 40.9 0.1 2 39 774 811 773 814 0.94 3 4 1.1e-17 2.3e-14 52.6 0.0 1 45 828 873 828 873 0.98 4 4 1.1e-19 2.3e-16 58.9 0.0 1 43 880 923 880 924 0.97
Sequence Information
- Coding Sequence
- atggCTGCTGTACGTGGACATCAGTACTTTAGTCTCCGATGGAACAACTACCAGAACACGATGACATCCGTGTTCCAGCAACTGCGCGAAGATCTCTCCTTTGTCGATGTGACCTTGTCCTGCGAACACGGATCCCTCAAGGCACACAAGGTCGTCCTCTCCGCCTGTTCGACGTACTTTCAAAAACTTCTGCTCGAGAATCCATGCAAACATCCAACAATCATCCTACCCGCCGATATCATATTCACAGATCTGAAAACAATCATCGATTTTGTCTACCGCGGTGAGATCGATGTCACCGAATCGGAACTACAGGGCCTCTTGCGCACCGCCGAACAATTGAAGATCAAAGGCCTCTGCGAGACAGCGGAAAACGCTGATGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATACAGCAGGCGGTCGTGGGGAGCATCGTCAATCCCAGCATAGTGCCGGGGGGAGCACCATCGCCCTCGctcgagcagcagcaccaccagcaccaccaacaACAGGCCCAAGCACAGGCCCAGGCTCAGGCCcaccagcaggagcaacaccagcaacagcagcagcaacagcaacagcagcaggtgcatgcccagcagcagcagcaacagcaacaaatcaACGCCTTGTTGACGCAGCACGGTGTGGCCAGCGGCAGTGCATCGTTGGGCGGACAGCTGCTCAGCACGACAGCGAGTGGGAGTAGCGGTAGCGGAGCAGGCGGTCTGCAGGCGCAATCCGGGCTGCAGCCGACGACGCGCAAGTCGCGACTCAAGCGCTCCAAGTCTCCGGATCTGCAATTGGGCGgaagcggcaacagcagcatctcccagcagccacagccggcCCATCACCACTCGCAGACGCTGCTTCTgcagggccagagccagacctcCATTGTGAGCCTACAGCAAACGGCCGAGGGCAATTATATACCCGTGCCGGGCACCGGTGACGAGTCGGACGTGGACCACGAACACGATCACGATCACGACCACGATCACGACCACTCCCACGATCACTCCCACAATCTCTCACACCcccacgaccacgaccacgaaCACGGCCACGAGCACGAGAACAGGCCGAGCAAAATCTGCAAGACAGAGCAATCCCTGGCCTCGCCATCGTCCAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACTGCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgACTAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAGCACGTCGATCTGTCGTGCAACCCCAGTACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATCCATCGACTCGATCAATCTCCCATGCATTCGATAGCCCACCACCATACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAACATTTGGCGGCTGCCCAGCAGCATGCGATCTCccaggcccagcagcagcatgcccatcatcaagcccaacagcagcagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAGAGTCAagcccagcagcaacagcaacaacaacagcagcagcagcagcaacaacatcaacaacagcagcagcagcaacagcaacagcagcatcaccagcaacagcaggcggcggcagcggcagccgcagcagctgtACACGCTCAGCATGGTGGGCATGTGACGCACGCGGAGATGAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAGATTAAGCACGAGCCGGGCATGATTATAACGCCTGAGATTGTCAATATGATGTCCTCAGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAACGGTTCGCCGCACGATCAGAAGGAGCCGCACTACACGAACTTGGATCAGCAGcatggaggaggagggctGGGCGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcaTGGGTGGTggggctggctctggctctggcgaGAAAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCACTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGTCAAATATCCGCCAATAAGGCGTCCAAAGCTTTTGGGATACCCTCATCGACGCTCTACAAGATAGCTCGTCGTGAGGGTATCCGCCTAGCGGCGCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACACCATGGTCCGAGGATGCCATGAACGAGGCCCTCAATTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGGGGCAAGTACGACGTGGTGGCCAACACTAGTGGCGTGTCGCTGCTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAACACAGTCAGGAGAATTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCCCAGCATCATAGCACACCGCAGCATCACAGCTCGTCCCAGGGGCCGCCAACGCCGCAGCATATGCAACAGCATGTGGTGCAtatgcagcaacagcaatcgCCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCGAGCAGCCAGGTGGTGCAtagccaacagcaacagcagcagcagcagcttcagcagATCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVPGGAPSPSLEQQHHQHHQQQAQAQAQAQAHQQEQHQQQQQQQQQQQVHAQQQQQQQQINALLTQHGVASGSASLGGQLLSTTASGSSGSGAGGLQAQSGLQPTTRKSRLKRSKSPDLQLGGSGNSSISQQPQPAHHHSQTLLLQGQSQTSIVSLQQTAEGNYIPVPGTGDESDVDHEHDHDHDHDHDHSHDHSHNLSHPHDHDHEHGHEHENRPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAISQAQQQHAHHQAQQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQQQHQQQQQQQQQQQHHQQQQAAAAAAAAAVHAQHGGHVTHAEMSGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGGLGGSVCGPGGAGGGGGMGGGAGSGSGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00473901;
- 90% Identity
- iTF_00535963;
- 80% Identity
- iTF_00480942;