Basic Information

Insect: Drosophila subobscura
Gene Symbol: lolal
Assembly: GCA_008121235.1
Location: NC:6609101-6655331[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 8.6e-12 1.6e-08 33.7 0.0 1 40 731 771 731 774 0.90

2 4 4.7e-14 8.8e-11 40.9 0.1 2 39 786 823 785 826 0.94

3 4 1.1e-17 2.1e-14 52.5 0.0 1 45 840 885 840 885 0.98

4 4 1.1e-19 2.1e-16 58.9 0.0 1 43 892 935 892 936 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	8.6e-12	1.6e-08	33.7	0.0	1	40	731	771	731	774	0.90
2	4	4.7e-14	8.8e-11	40.9	0.1	2	39	786	823	785	826	0.94
3	4	1.1e-17	2.1e-14	52.5	0.0	1	45	840	885	840	885	0.98
4	4	1.1e-19	2.1e-16	58.9	0.0	1	43	892	935	892	936	0.97

Sequence Information

Coding Sequence: ATGGCTGCCGTGCGAGGACATCAGTACTTTAGCCTGCGATGGAACAACTATCAGAACACGATGACATCCGTGTTCCAGCAACTGCGCGAAGATCTCTCCTTTGTCGATGTGACCTTGTCCTGCGAACACGGCTCCCTCAAGGCACACAAGGTTGTGCTCTCCGCCTGCTCGACATACTttcagaagctgctgctggagaatcCGTGCAAACATCCAACAATCATCCTACCCGCCGATATCATATTCACAGACCTCAAAACAATCATCGATTTCGTCTACCGCGGCGAGATTGATGTCACCGAATCAGAACTACAGGGCCTCTTGCGCACCGCCGAACAACTGAAGATCAAAGGCCTCTGTGAGACAGCGGAAAACGCTGATGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATACAGCAGGCAGTCGTGGGCAGCATTGTGAATCCCAGCATAGTGCCGGGTGGAGCAGCCTCACCCTcgctcgagcagcagcaccatcagcaccaccaacagACCCAAgcgcaggcccaggcccacgaacaggagcagcaactccagcagcaacagcagcaacagcagcagcaacagcagcagcaggtgcatgcccagcagcatcaacaaatCAACGCTTTGTTGACGCAACACGGAGTGGCCAGTGGCGGCAGTGTGCCTTTGGGTGGACAGCTGCTCAGCACGACAGCGAGTggtagcagcggcagcggggcTGGCAGCTTGCAGTCACAGTCCGGGCTCCAGCCGACGACGCGCAAGTCGCGACTCAAGCGATCCAAGTCTCCGGATCTACAGCTGGTCGgaggcagcgccagcggcagcagcagcggcgtctcccagcagccacagccggcGCATCATCACGCGCAGACGCTGCTCATACAGGGCCAGAATCAGACATCCATTGTGAGCCTACAGCAGACGGCCGAGGGCAATTACATACCCGTGCCGGGCACCGGTGACGAGTCGGACGTGGATCACGATCACGATCACGATCACGACCACTCCCACGATCACACCCACAATCTTTCACACTCCCACGaacacgagcacgagcacgagcacgagagCAAGCCGAGCAAGATCTGCAAGACAGAGCAATCGCTGGCCTCGCCATCGTCCAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACCTCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTTACGGAGCACGTCGACCTCTCGTGCAACCccagcacagacacacgcgATCTATCAAaTCCCACCGATCCGCTCGACATTGACAATCATTTGGCGCAGCAGATCCATCGACTCGATCAATCTCCCATGCATTCGATAGCCCATCATCATACCGGGGACGAGAGCAACTCGAACCTCGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAGCATCTGGCGGCTGCCCAGCAGCATGCTATCTcccacgcccagcagcagcatgcccaTCATcaggcacagcaacagcagcagcagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAAAGTCaggcccaacagcagcagcagcaacagcagcagcagcatcagcaacagcagcagcagcagcagcagcagcatcaccagcagcaacagcaacagcagcaggcggcggcagcggcagctgtgcACGCCCAACATGGTGGGCATGTGACGCACGCGGAGATCAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAAATAAAGCATGAGCCCGGAATGATTATAACGCCGGAGATTGTCAATATGATGTCCTCAGGGCATATGGATATGTACAATTCGGATACGAGCGAGGATTCGATGATGATCGCGAATGGTTCGCCGCACGATCAGAAGGAGCCGCACTATACGAACTTGGATCAGCAGCATGGAAGCGGGCTGGGTGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcaTGGGTGGtggggctggctctggctctggcgagAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCATGGAACGAGGATGCCCTGCAGAATGCCTTGGAGGCGTTACGTTCGGGCCAAATATCCGCCAATAAGGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGCCGTGAGGGCATCCGCCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTATGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACTCCCTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCAGTGCGGGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTGTACGGCCGCTTCAAGCGCGGCAAGTACGATGTGGTGGCAAACACGAGCGGCGTATCGCTGATGAACACCTCGGGCAACACCACGGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGatGCATatgttgcagcaacagttCCCGTACAGTCCATCGCCGCATCCGGCAACGCCTCAGCATCATAGCACACCGCAGCATCACAGCTCGTCTCAGGGGCCGCCAACGCCGCAGCATATGCAGCAGCATGTGGTGCacatgcagcaacagcagtcgccGCATCAGGGCCACCATCCGCAGCACATGCAACAGGACGTGGTGACGTCAAGCAGCCAGGTGGTGCAtagccaacagcaacagcagcaacagcagcagcagcagcagcttcagcagatCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
Protein Sequence: MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVPGGAASPSLEQQHHQHHQQTQAQAQAHEQEQQLQQQQQQQQQQQQQQVHAQQHQQINALLTQHGVASGGSVPLGGQLLSTTASGSSGSGAGSLQSQSGLQPTTRKSRLKRSKSPDLQLVGGSASGSSSGVSQQPQPAHHHAQTLLIQGQNQTSIVSLQQTAEGNYIPVPGTGDESDVDHDHDHDHDHSHDHTHNLSHSHEHEHEHEHESKPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTSAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTDPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHAISHAQQQHAHHQAQQQQQQQQQHLHAQQLMAQSQAQQQQQQQQQQHQQQQQQQQQQHHQQQQQQQQAAAAAAVHAQHGGHVTHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGSGLGGSVCGPGGAGGGGGMGGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSMHMLQQQFPYSPSPHPATPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQQQLQQIYQHHGTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00619072;
90% Identity: iTF_00535963;
80% Identity: iTF_00601138;