Basic Information

Insect: Drosophila pseudoobscura
Gene Symbol: lolal
Assembly: GCA_009870125.2
Location: CM020869.1:19857799-19899506[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1e-11 2.4e-08 33.7 0.0 1 40 716 756 716 759 0.90

2 4 6e-14 1.3e-10 40.9 0.1 2 39 771 808 770 811 0.94

3 4 1.4e-17 3.1e-14 52.5 0.0 1 45 825 870 825 870 0.98

4 4 1.4e-19 3.2e-16 58.9 0.0 1 43 877 920 877 921 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1e-11	2.4e-08	33.7	0.0	1	40	716	756	716	759	0.90
2	4	6e-14	1.3e-10	40.9	0.1	2	39	771	808	770	811	0.94
3	4	1.4e-17	3.1e-14	52.5	0.0	1	45	825	870	825	870	0.98
4	4	1.4e-19	3.2e-16	58.9	0.0	1	43	877	920	877	921	0.97

Sequence Information

Coding Sequence: ATGGCTGCCGTACGAGGACATCAGTACTTTAGCCTGCGATGGAACAACTACCAGAACACGATGACATCCGTGTTCCAGCAACTGCGCGAAGATCTCTCCTTTGTCGATGTGACCTTGTCCTGCGAACACGGATCCCTCAAGGCACACAAGGTCGTCCTCTCCGCCTGCTCGACGTACTTTCAAAAGCTCCTGCTCGAGAACCCGTGCAAACATCCGACAATCATCCTACCCGCCGATATCATATTCACAGATCTGAAAACAATCATCGACTTCGTCTACCGCGGTGAGATTGATGTCACCGAATCGGAACTACAGGGCCTCTTGCGCACCGCCGAACAATTGAAGATCAAAGGCCTCTGCGAGACAGCGGAAAACGCGGATGACTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATCCAGCAGGCGGTCGTGGGGAGCATCGTCAACCCGAGCATAGTGTCGGGGGGAGCAGCATCGCCGCcgctcgagcagcagcagcagcagcaccaccaccagcaccaccaagcccaggcccaggcccaagcacaggcccaagcccaggcGCAGGCCcaccagcaggagcaacaccagcaacagcaggcgcaGGTGcatgcccagcagcagcagcaacagcagcaaatcaACGCCTTGCTGACGCACCACGGagtggccagtggcagtgcaTCTTTGGGCGGACAGCTGCTCAGCGCGACAGCGAGtgggagcagcggcagcggagcAGGCGGTCTGCAGTCGCAGCCCGGGCTACAGCCGACGACGCGCAAGTCGCGACTCAAGCGATCCAAGTCTCCGGATCTGCAACTGGGCGGAGGCAGCGTCagcgccagcggcagcagcagcgtctcccagcagccacagccggcCCACCACCACTCGCAGACGCTGCTTCTGCAgggccagagtcagagccagagccacagccagaccTCCATTGTGAGCCTACAGCAGACGGCCGAGGGCAATTATATACCCGTGCCGGGGACCGGTGACGAGTCGGACGTGGACCACGAACACGatcacgaccacgaccacgaccactcCCACGATCACTCACACAATCTGTCACACTCCCACGACcacgagcacgagcaggaGCACGAGCACGGCCACGATCACGAGAACAGGCCGAGCAAAATCTGCAAGACAGAGCAATCCCTGGCCTCGCCGTCGTCCAACTCGTCCAGCCACTCGAACAATGCAACGGGCAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAGCACGTCGATCTGTCGTGCAACCCCAGCACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATCCACCGACTCGATCAATCTCCCATGCACTCGATAGCCCATCACCATACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAGCACTTGGCGGCTGCCCAGCAGCACGCGCTCTcccaggcccagcagcagcatgcccATCAtcaggcccagcagcagcagcagcaacacctcCATGCCCAGCAGCTGATGGCCCAGAGtcaggcccagcagcagcagcagcagcaacagcagcagcagcagcagcatcaacaacagcagcagcaacagcaccaccagcagcagcagcagcaggcggcggcagcggcagccgcagcagctgtACACGCCCAGCATGGTGGGCATGTGACGCACGCGGAGATGGGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAGATAAAGCACGAGCCGGGGATGATTATAACGCCGGAGATTGTCAACATGATGTCCTCAGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCGAACGGTTCGCCGCACGATCAGAAGGAGCCGCACTACACGAACTTGGATCAGCAgcatggaggaggaggaggagggctgGGCGGCAGCGTTTGCGGCCccggtggtgctggtggtggtgggggcaTGGGTGGTggggctggctctggctctggcgagAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGCCAAATATCCGCCAATAAGGCGTCCAAAGCCTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGTGAGGGCATCCGCCTGGCGGCGCCCTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACACCATGGTCCGAAGACGCCATGAACGAGGCCCTCAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAGTACGACGTGGTGGCTAACACCAGCGGCGTCTCGCTGCTGAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCCCAGCATCATAGCACGCCGCAGCATCACAGCTCGTCCCAGGGGCCGCCCACGCCGCAGCACATGCAGCAGCATGTGGTGCatatgcagcaacagcagtcgcCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCAAGCAGCCAGGTGGTGCatagccaacagcaacaacagcagcagcagcagcagcagcttcagcagaTCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
Protein Sequence: MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIVSGGAASPPLEQQQQQHHHQHHQAQAQAQAQAQAQAQAHQQEQHQQQQAQVHAQQQQQQQQINALLTHHGVASGSASLGGQLLSATASGSSGSGAGGLQSQPGLQPTTRKSRLKRSKSPDLQLGGGSVSASGSSSVSQQPQPAHHHSQTLLLQGQSQSQSHSQTSIVSLQQTAEGNYIPVPGTGDESDVDHEHDHDHDHDHSHDHSHNLSHSHDHEHEQEHEHGHDHENRPSKICKTEQSLASPSSNSSSHSNNATGNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAQQHALSQAQQQHAHHQAQQQQQQHLHAQQLMAQSQAQQQQQQQQQQQQQHQQQQQQQHHQQQQQQAAAAAAAAAVHAQHGGHVTHAEMGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGGGGLGGSVCGPGGAGGGGGMGGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQQLQQIYQHHGTPERS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00473901;
90% Identity: iTF_00535963;
80% Identity: iTF_00580824;