Dros041648.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000704.1:14482123-14499992[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.6e-12 1e-08 36.5 0.0 1 39 294 333 294 337 0.90 2 4 1e-11 1.2e-08 36.3 0.1 2 39 349 386 348 389 0.94 3 4 3.6e-18 4.4e-15 56.9 0.0 2 45 404 448 403 448 0.97 4 4 4.1e-18 5e-15 56.8 0.1 1 42 455 497 455 498 0.97
Sequence Information
- Coding Sequence
- ATGCCCCTTCCGTTAAACCACCCTCAAGCAGCCATTCCTGGTCCACCGAACGACGTCGTCATCCAACCAtctTTGCTGAAAACGGCCGACCAGCTAAAGATCAAGGGCCTCTGTGAGGTCCCGGAGAGCAGGGAGGGTCCGCCTTCGGTTAGCCTCAGCTCACCACCACGAGAATCCAGTGCCACCAGGTTAAACTACACAAAGCTGAAAAGGCATCATCCGAAGTACAAGAGGCCAAGAACTACCTTCGAAGCTCGCAACTCAGATTCCAGGCACCACGACTTGTACAAGGAGGAAGACGCTGAAGGAGATTTTGAACGCGACAAAGAGAATCACAGGGACTGCTGGCAAACCGAAGATGAGGAGTGCGCGGAGGCAACAGCAGCATCAGTAGTCCTGGAAACCTGCCAACGCGACAATAACAACGGTAACGGTACTACAAACAACAACAACGGTGACATGTTTTGTCATACAGGTCTTGGCCACTACGGGCACCATCCGGACCCTGGGGAAGTCGACCTACCTCCCGAGACACAGCCAACACCACCTAGTGCTACTCTTGTCGGTACCACCATCACACATCTCAGAGACTCCGATCATCAGTCCACAGAAATTCAAAACTGCGACAGCGTGAagataaaatttgaaactttacaCACAATGGACTCATCGGATACAATAGATATCGACAGTCATATGTCCGATAGAGCGAGTGTGAGTTCAAAAACAGCAGGGGAAAATGACAACATGATGATGATAACACCCGAACTTCTTGGTCTGATGCCGTCTGGAAACTCCGTCCATTCGGATTCTGGAGATAACAATTCAAGGGGTCACTCTGGCCAGTCAGGATCTCATCATCATGGCTCAAAATCTTGGACCCAGGAAGACATGGATGCTGCTTTGGATGCCTTGAGGAATCACGACATGAGTCTCACCAAAGCATCTGCAACATTTGGCATACCTTCGACGACGCTGTGGCAGAGAGCTCATCGTTTAGGAATCGACACACCCAAAAAAGACGGACCAACTAAATCGTGGAGCGATGAAAGTCTCAATAATGCTCTTGAAGCCTTGAGAACTGGAACAATATCTGCCAACAAAGCTTCCAAGGCCTTTGGCATTCCTTCAAGTACCTTGTACAAAATTGCTAGGAGAGAAGGCATCAGACTTGCAGCACCGTTCAATGCGAGCCCTACAACTTGGTCGCCGGCCGATCTTGATAGGGCGTTAGAGGCGATTAGGTCTGGACAAACATCAGTGCAAAGAGCATCAACGGAGTTTGGCATACCAACTGGAACACTTTATGGAAGGTGTAAGAGGGAAGGAATTGAACTCAGTAGAAGTAATCCTACTCCGTGGAGCGAGGACGCTATGACCGAAGCTCTTGAGGCTGTCAgATTGGGGCATATGAGTATAAACCAAGCTGCCATTCACTATAACTTACCATACTCATCATTATACGGACGATTCAAGAGAGGAAAATACGAGGAGCCAGTAGTCAATGAAATGTCTCAAGATGGAAGCAGTCCTCATTATCATCACCAGAGCCCGAGTCAGAATCATTCATCCTCTCTTCCAGATCAAATGCCCTACCAGGGCAGCTGA
- Protein Sequence
- MPLPLNHPQAAIPGPPNDVVIQPSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPRESSATRLNYTKLKRHHPKYKRPRTTFEARNSDSRHHDLYKEEDAEGDFERDKENHRDCWQTEDEECAEATAASVVLETCQRDNNNGNGTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGENDNMMMITPELLGLMPSGNSVHSDSGDNNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSPHYHHQSPSQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01299074; iTF_00880359; iTF_00880602; iTF_00881149; iTF_01391873; iTF_01394194; iTF_01391004; iTF_01390110; iTF_00010999; iTF_01389339; iTF_01538087; iTF_01537761; iTF_01392681; iTF_01393417; iTF_00879534; iTF_00879853;
- 80% Identity
- -