Basic Information

Insect: Synergus japonicus
Gene Symbol: -
Assembly: GCA_900474275.1
Location: UCOH01005943.1:23717-31212[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.4e-12 4.2e-09 36.4 0.0 1 39 346 385 346 389 0.90

2 4 5.1e-12 4.9e-09 36.2 0.1 2 39 401 438 400 441 0.94

3 4 1.9e-18 1.8e-15 56.8 0.0 2 45 456 500 455 500 0.97

4 4 2.1e-18 2e-15 56.6 0.1 1 42 507 549 507 550 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.4e-12	4.2e-09	36.4	0.0	1	39	346	385	346	389	0.90
2	4	5.1e-12	4.9e-09	36.2	0.1	2	39	401	438	400	441	0.94
3	4	1.9e-18	1.8e-15	56.8	0.0	2	45	456	500	455	500	0.97
4	4	2.1e-18	2e-15	56.6	0.1	1	42	507	549	507	550	0.97

Sequence Information

Coding Sequence: ATGGTGCAACGGGTTGGGGGTGGTCGATACGGCCCTGGGGCCGCGACAGCCGCGTCGGAAGCTTCCCCTATTCTTCCTGCGGGCGTTTTTGCCTTCTCCGCCTCCGACACCAGACCTTCCCCAGCACAGCCCCACTCACAGGCTATGGCATCACCATCACCCACCCCCACAACCCCGCCTAATCGCGCCACCCCTGGGTTGATTAAAGAACAGAGCCCGGCTTCGTCCTTGCTGAAGACGGCAGATCAGCTGAAGATCAAGGGCCTTTGTGAGGTCCCCGAGAGCAGGGAGGGACCACCGTCGGTTAGCCTGAGCTCACCACCACGTGAATCCGGTACCACCAGGTTAAACTACACAAAGCTAAAGAGGCACCATCCGAGATACAAGAGGCCAAGAACCACTTTCGAGGCTCGCAACTCGGATTCCAGGCACCACGACTTGTACAAGGAGGAAGACGCAGAAGGAGAATTTCAGCGTGATAAAGAGAATCACAGGGATTGTTGGCAGACTGAAGATGAGGAGTGTGCGGAGGCAACAGCAGCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACGGTACTACAAACAACAACAACGGTGACATGTTTTGTCACACAGGGCTTGGCCACTACGGACACCATCCGGACCCAGGAGAAGTAGATCTTCCTCCTGAGACACAGCCAACACCACCTAGTGCTACTCTCGTCGGCACGACGATTACACATCTCAGAGACTCGGATCATCAATCTACAGaaatcCAAAATTGTGACAGCGTCAAGATAAAGTTCGAGACCTTACACACAATGGACTCTTCGGATACAATAGACATCGACAGCCACATGTCGGATAGAGCGAGTGTGAGTTCCAAAACAGCAGGCGACAATGACAACATGATGATGATAACACCCGAGCTTCTGGGTCTCATGCCGTCTGGAAATTCCGTCCATTCGGATTCTGGTGAAAATAACTCCAGGGGTCATTCTGGCCAATCAGGGTCGCACCACCACGGCTCGAAATCTTGGACCCAAGAGGACATGGACGCAGCTTTGGACGCCTTGAGAAATCACGACATGAGTCTCACCAAAGCATCCGCAACATTTGGAATACCTTCGACGACACTGTGGCAAAGAGCTCATCGTTTAGGAATTGATACACCGAAAAAAGATGGACCAACAAAATCGTGGAGTGATGAGAGTCTTAATAATGCTTTGGAAGCGTTAAGGACCGGAACAATATCTGCGAATAAAGCGTCCAAGGCTTTTGGTATACCATCCAGTACCCTGTATAAAATTGCAAGGAGAGAAGGAATCAGACTCGCAGCTCCTTTTAATGCAAGCCCTACAACTTGGTCACCTGCTGACCTGGATAGAGCTTTGGAGGCAATTAGGTCTGGACAAACATCGGTCCAGAGAGCATCGACGGAGTTTGGAATTCCAACTGGAACTCTTTATGGAAGGTGCAAAAGGGAAGGAATTGAACTTAGTAGAAGTAATCCTACTCCGTGGAGCGAGGATGCTATGACTGAAGCTCTTGAGGCTGTTAGattggGGCACATGAGTATAAATCAAGCAGCTATTCACTACAACTTGCCGTACTCATCGCTATATGGGCGTTTCAAGAGAGGAAAATACGAAGAGCCAGTAGTCAACGATATGTCGCAGGATGGTAGCAGTCCTCATTATCACCATCAAAGTCCGAGTCAAAATCACACTTCTTCCCTTCCTGATCAAATGCCCTATCAGGACagctga
Protein Sequence: MVQRVGGGRYGPGAATAASEASPILPAGVFAFSASDTRPSPAQPHSQAMASPSPTPTTPPNRATPGLIKEQSPASSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPRESGTTRLNYTKLKRHHPRYKRPRTTFEARNSDSRHHDLYKEEDAEGEFQRDKENHRDCWQTEDEECAEATAAAVVLESCQRDNNNGNGTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSPHYHHQSPSQNHTSSLPDQMPYQDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00306165;
90% Identity: iTF_00460397;
80% Identity: iTF_01390110;