Scon004060.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000013.1:12303626-12312501[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-12 5.1e-09 36.3 0.0 1 39 363 402 363 406 0.90 2 4 4.6e-12 5.9e-09 36.1 0.1 2 39 418 455 417 458 0.94 3 4 1.7e-18 2.2e-15 56.7 0.0 2 45 473 517 472 517 0.97 4 4 1.9e-18 2.5e-15 56.5 0.1 1 42 524 566 524 567 0.97
Sequence Information
- Coding Sequence
- atgaaaaatacggAAGCAGCACAATCTTCCCAGTCTCGTATTCCAGTATCGAATGCAAAAGACTCCAAAGACACGAGACACGAGAAAAAACTCAGTCTCGTGTGGCTAAAAGGGGTAAAACCACCTATCCTCATTGCGTTGAATAAGCCGGAAAGGTTCACCATCCGAAACGTCGATGAATCATTTCTGGACTTAACGAATCCTCGAACTGGGCGAAATATTCGCGAAACATGCGTGAATATAGCACCGGTAGAAAGTCGTTTAGGTGGTGCAACGTCCTTGCTAAAGACGGCAGATCAGCTGAAGATCAAGGGCCTTTGTGAGGTCCCCGAAAGCAGGGAGGGTCCACCGTCGGTTAGCCTAAGCTCACCACCACGAGAATCCGGTACCACCAGGTTAAACTACACAAAGCTAAAGAGGCACCATCCGAGATACAAGAGGCCAAGAACCACTTTCGAGGCTCGCAACTCGGATTCCAGGCACCACGACTTGTACAAGGAGGAAGACGCAGAAGGAGACTTTCAGCGCGATAAAGAGAATCACAGGGATTGTTGGCAGACCGAAGATGAGGAGTGTGCGGAGgcaacagcagcagcagtAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACGGTACTACAAACAACAACAACGgtGACATGTTTTGTCACACAGGGCTTGGCCACTACGGACACCATCCGGACCCAGGAGAAGTTGATCTACCTCCTGAGACACAGCCAACACCACCTAGTGCTACTCTCGTCGGCACGACCATCACACATCTCAGGGACTCGGATCATCAATCTACAGaaatcCAAAATTGTGACAgcgtgaaaataaaattcgagaCCTTACACACAATGGACTCCTCGGATACAATAGACATCGACAGCCACATGTCGGACAGAGCGAGCGTGAGTTCCAAAACGGCAGGCGACAACGACAACATGATGATGATAACACCCGAACTTCTCGGCCTCATGCCGTCTGGAAATTCCGTCCATTCGGATTCTGGTGAAAATAACTCCAGGGGTCATTCTGGTCAATCAGGGTCGCACCACCACGGCTCAAAATCTTGGACTCAAGAAGACATGGACGCAGCTTTGGACGCCTTGAGAAATCACGACATGAGCCTCACTAAAGCGTCTGCAACATTTGGAATACCTTCGACAACATTGTGGCAAAGAGCTCATCGTTTAGGAATTGATACACCGAAGAAAGATGGACCAACAAAATCGTGGAGTGATGAGAGTCTTAATAATGCTCTCGAAGCATTAAGGACAGGAACAATATCTGCGAATAAAGCATCCAAGGCTTTTGGCATACCTTCCAGTACCCTGTACAAAATTGCTAGGAGAGAAGGAATTAGGCTTGCAGCTCCTTTTAATGCCAGCCCTACAACTTGGTCACCCGCTGATCTGGATAGAGCTTTGGAAGCAATTAGGTCTGGTCAAACATCGGTCCAGAGAGCGTCCACGGAATTTGGAATACCAACTGGAACGCTTTATGGAAGGTGCAAGAGGGAAGGAATTGAACTTAGTAGAAGTAATCCTACTCCGTGGAGCGAGGACGCTATGACTGAAGCTCTTGAGGCTGTTAGgttggGGCACATGAGTATAAATCAAGCAGCTATTCACTATAACTTGCCGTACTCATCGCTATATGGGCGATTCAAGAGAGGAAAATACGAAGAGCCAGTAGTCAACGATATGTCGCAAGACGGTAGCAGTCCTCATTATCACCATCAAAGTCCGAGTCAAAATCACACCTCTTCCCTTCCCGATCAAATGCCCTATCAGGACAgctga
- Protein Sequence
- MKNTEAAQSSQSRIPVSNAKDSKDTRHEKKLSLVWLKGVKPPILIALNKPERFTIRNVDESFLDLTNPRTGRNIRETCVNIAPVESRLGGATSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPRESGTTRLNYTKLKRHHPRYKRPRTTFEARNSDSRHHDLYKEEDAEGDFQRDKENHRDCWQTEDEECAEATAAAVVLESCQRDNNNGNGTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSPHYHHQSPSQNHTSSLPDQMPYQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00460397;
- 80% Identity
- -