Smag004472.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000015.1:12996735-13006205[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-12 5e-09 36.5 0.0 1 39 301 340 301 344 0.90 2 4 6.3e-12 5.8e-09 36.3 0.1 2 39 356 393 355 396 0.94 3 4 2.3e-18 2.1e-15 56.9 0.0 2 45 411 455 410 455 0.97 4 4 2.6e-18 2.4e-15 56.7 0.1 1 42 462 504 462 505 0.97
Sequence Information
- Coding Sequence
- ATGGCATCACCATCACCCACCCCCACAACCCCGCCTAATCGCGCCACCCCTGGGTTGATTAAAGAACAGAGCCCGGCTTCGGCAGGAAGGTCCTTGCTGAAGACGGCAGATCAGCTGAAGATCAAGGGCCTTTGTGAGGTCCCCGAGAGCAGAGAGGGTCCACCGTCGGTTAGCCTCAGCTCACCACCACGAGAATCCGGTACCACCAGGTTAAATTACACAAAGCTAAAGAGGCACCATCCGAGATACAAGAGGCCAAGAACCACTTTCGAGGCTCGCAACTCAGATTCCAGGCACCACGACTTGTACAAGGAGGAAGACGCAGAAGGAGACTTTCAGCGCGATAAAGAGAATCACAGGGATTGTTGGCAGACCGAAGATGAGGAGTGTGCGGAGGCAACAGCAGCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACGGTACTACAAACAACAACAACGgtGACATGTTTTGTCACACAGGGCTTGGCCACTACGGACACCATCCGGACCCAGGAGAAGTGGATCTTCCTCCGGAGACACAGCCAACACCACCTAGTGCTACTCTCGTCGGCACGACCATCACACATCTCAGGGACTCGGATCATCAATCTACAGaaatcCAAAATTGCGACAGCGTGAAGATAAAGTTCGAGACCTTACACACAATGGACTCCTCGGATACAATAGACATCGACAGCCACATGTCGGACAGAGCGAGTGTGAGTTCCAAAACGGCAGGCGACAACGACAACATGATGATGATAACACCCGAACTTCTCGGCCTCATGCCGTCTGGAAATTCCGTCCATTCGGATTCTGGTGAAAATAACTCCAGGGGTCATTCTGGCCAATCAGGATCGCACCACCATGGCTCAAAATCCTGGACTCAAGAGGACATGGACGCAGCTTTAGACGCCTTGAGAAATCACGACATGAGTCTCACCAAAGCGTCTGCAACATTTGGAATACCTTCGACAACACTGTGGCAAAGAGCTCATCGTTTAGGAATTGATACACCAAAAAAAGATGGACCAACAAAATCGTGGAGTGATGAGAGTCTTAATAATGCTCTGGAAGCGCTAAGGACCGGAACAATATCTGCGAATAAAGCATCCAAGGCTTTTGGCATACCTTCCAGTACCCTGTACAAAATTGCTAGGAGAGAAGGAATCAGGCTTGCAGCTCCTTTTAATGCAAGCCCTACAACTTGGTCACCTGCTGACTTGGATAGAGCTTTGGAGGCAATTAGGTCTGGGCAAACATCGGTCCAGAGAGCGTCGACGGAGTTTGGAATTCCAACTGGAACTCTTTATGGAAGGTGCAAGAGGGAAGGAATTGAACTTAGTAGAAGTAATCCTACTCCGTGGAGCGAGGACGCTATGACTGAAGCTCTTGAGGCTGTTAGatTGGGGCACATGAGTATAAATCAAGCAGCTATTCACTACAACTTGCCGTACTCATCGCTATATGGGCGTTTCAAGAGAGGAAAATACGAAGAGCCAGTAGTCAACGATATGTCGCAGGATGGTAGCAGTCCTCATTATCACCATCAAAGTCCGAGTCAAAATCACACTTCTTCCCTTCCCGATCAAATGCCCTATCAGGACAgctga
- Protein Sequence
- MASPSPTPTTPPNRATPGLIKEQSPASAGRSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPRESGTTRLNYTKLKRHHPRYKRPRTTFEARNSDSRHHDLYKEEDAEGDFQRDKENHRDCWQTEDEECAEATAAAVVLESCQRDNNNGNGTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSPHYHHQSPSQNHTSSLPDQMPYQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00460397;
- 80% Identity
- -