Sito016142.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000088.1:172818-180362[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-12 4.7e-09 36.6 0.0 1 39 277 316 277 320 0.90 2 4 5e-12 5.4e-09 36.4 0.1 2 39 332 369 331 372 0.94 3 4 1.8e-18 2e-15 57.0 0.0 2 45 387 431 386 431 0.97 4 4 2.1e-18 2.3e-15 56.8 0.1 1 42 438 480 438 481 0.97
Sequence Information
- Coding Sequence
- ATGAATTCTGCAATTCGATCCTTGCTGAAGACGGCAGATCAGCTGAAGATCAAGGGCCTTTGTGAGGTTCCCGAGAGCAGAGAGGGTCCACCGTCGGTTAGCCTCAGCTCACCACCACGTGAATCCGGTACCACCAGGTTAAACTACACAAAGCTAAAGAGGCACCATCCGAGATACAAGAGGCCAAGAACCACTTTCGAGGCTCGCAACTCGGATTCCAGGCACCACGACTTGTACAAGGAGGAAGACGCAGAAGGAGAATTTCAGCGCGATAAAGAGAATCACAGGGATTGTTGGCAGACTGAAGATGAGGAGTGTGCGGAGGCAACAGCAGCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACGGTACTACAAACAACAACAACGGTGACATGTTTTGTCACACAGGGCTTGGCCACTACGGACACCATCCGGACCCAGGAGAAGTGGATCTTCCTCCGGAGACACAGCCAACACCACCTAGTGCTACTCTCGTCGGCACGACCATCACACATCTCAGGGACTCGGATCATCAATCTACAGAAATCCAAAATTGCGACAGCGTGAAGATAAAGTTCGAGACCTTACACACAATGGACTCCTCGGATACAATAGACATCGACAGCCACATGTCGGATAGAGCGAGTGTGAGTTCCAAAACAGCAGGCGACAACGACAACATGATGATGATAACACCTGAACTTCTCGGTCTCATGCCGTCTGGAAATTCCGTCCATTCGGATTCTGGTGAAAATAACTCCAGGGGTCATTCTGGCCAATCAGGGTCGCATCACCACGGCTCGAAATCCTGGACCCAAGAAGACATGGACGCAGCTTTGGACGCCTTGAGAAATCACGACATGAGTCTCACCAAAGCATCTGCAACATTTGGAATACCTTCGACGACACTGTGGCAAAGAGCTCATCGTTTAGGAATTGATACACCGAAAAAAGATGGACCAACAAAATCGTGGAGTGATGAAAGTCTTAATAATGCTCTAGAAGCGTTAAGGACCGGAACAATATCTGCGAATAAAGCATCCAAGGCTTTTGGCATACCTTCTAGTACCCTGTACAAAATTGCTAGGAGAGAAGGAATCAGACTTGCAGCTCCTTTTAATGCTAGCCCTACAACTTGGTCACCTGCTGACCTGGATCGAGCTTTGGAGGCAATTAGGTCTGGACAAACATCGGTCCAGAGAGCATCGACGGAGTTTGGAATTCCAACTGGTACTCTTTATGGAAGGTGCAAAAGGGAAGGAATTGAACTTAGTAGAAGTAATCCTACTCCGTGGAGCGAGGATGCTATGACTGAAGCTCTTGAGGCTGTTAGGTTGGGGCACATGAGTATAAACCAAGCAGCTATTCACTACAACTTGCCGTACTCATCGCTATATGGGCGTTTCAAGAGAGGAAAATACGAAGAGCCAGTAGTCAACGATATGTCGCAGGATGGCAGCAGTCCTCATTATCATCATCAAAGTCCGAGTCAAAATCACACTTCTTCCCTTCCTGATCAAATGCCCTATCAGGACAGCTGA
- Protein Sequence
- MNSAIRSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPRESGTTRLNYTKLKRHHPRYKRPRTTFEARNSDSRHHDLYKEEDAEGEFQRDKENHRDCWQTEDEECAEATAAAVVLESCQRDNNNGNGTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSPHYHHQSPSQNHTSSLPDQMPYQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00460397;
- 80% Identity
- -