Basic Information

Insect: Synergus umbraculus
Gene Symbol: -
Assembly: GCA_900474325.1
Location: UCOK01017679.1:178578-185983[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.3e-12 4.7e-09 36.4 0.0 1 39 349 388 349 392 0.90

2 4 6.2e-12 5.4e-09 36.2 0.1 2 39 404 441 403 444 0.94

3 4 2.2e-18 2e-15 56.8 0.0 2 45 459 503 458 503 0.97

4 4 2.6e-18 2.2e-15 56.6 0.1 1 42 510 552 510 553 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.3e-12	4.7e-09	36.4	0.0	1	39	349	388	349	392	0.90
2	4	6.2e-12	5.4e-09	36.2	0.1	2	39	404	441	403	444	0.94
3	4	2.2e-18	2e-15	56.8	0.0	2	45	459	503	458	503	0.97
4	4	2.6e-18	2.2e-15	56.6	0.1	1	42	510	552	510	553	0.97

Sequence Information

Coding Sequence: ATGGTGCAACGGGTTGGGGGTGGTCGATACGGCCCTGGGGCCGCGACAGCCGCGTCGGAAGCTTCCCCTATTCTTCCTGCGGGCGTTTTTGCCTTCTCCGCCTCCAACACCAGACCTTCCCCAGCACAGCCCCACTCACAGGCTATGGCATCACCATCACCCACCCCCACAACCCCGCCTAATCGCGCCACCCCTGGGTTGATTAAAGAACAGAGCCCGGCTTCGGCAGGAAGGTCCTTGCTGAAGACGGCAGATCAGCTGAAGATCAAGGGCCTTTGTGAGGTCCCCGAGAGCAGGGAGGGTCCACCGTCGGTTAGCCTCAGCTCACCACCACGTGAATCCGGTACCACCAGGTTAAACTACACAAAGCTAAAGAGGCACCATCCGAGATACAAGAGGCCAAGAACCACTTTCGAGGCTCGCAACTCGGATTCCAGGCACCACGACTTGTACAAGGAGGAAGACGCAGAAGGAGAATTTCAGCGCGATAAAGAGAATCACAGGGATTGTTGGCAGACTGAAGATGAGGAGTGTGCGGAGGCAACAGCAGCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACGGTACTACAAACAACAACAACGGTGACATGTTTTGTCACACAGGGCTTGGCCACTACGGACACCATCCGGATCCAGGAGAAGTAGATCTACCTCCTGAGACACAGCCAACACCACCTAGTGCTACTCTCGTCGGCACGACCATCACACATCTCAGGGACTCGGATCATCAATCTACAGaaattcaaaattgcgACAGCGTCAAGATAAAGTTCGAGACCTTACACACAATGGACTCTTCGGATACAATAGACATCGACAGCCATATGTCGGATAGAGCGAGTGTGAGTTCCAAAACAGCAGGCGACAACGACAACATGATGATGATAACACCCGAGCTTCTGGGTCTCATGCCGTCTGGAAATTCCGTCCATTCGGATTCTGGTGAAAATAACTCCAGGGGTCATTCTGGTCAATCAGGGTCGCACCACCACGGCTCGAAATCTTGGACCCAAGAGGACATGGACGCAGCTTTGGACGCCTTGAGAAATCACGACATGAGTCTCACCAAAGCATCTGCAACATTTGGAATACCTTCGACGACACTGTGGCAAAGAGCTCATCGTTTAGGAATTGATACACCGAAAAAAGATGGACCAACAAAATCGTGGAGCGATGAGAGTCTTAATAATGCTTTGGAAGCGTTAAGGACCGGAACAATATCTGCGAATAAAGCGTCCAAGGCTTTTGGAATACCATCCAGTACCCTGTATAAAATTGCAAGGAGAGAAGGAATCAGGCTCGCAGCTCCTTTTAATGCAAGCCCTACAACTTGGTCACCTGCTGACCTGGATAGAGCTTTGGAGGCAATTAGGTCTGGACAAACATCGGTCCAGAGAGCATCGACTGAGTTTGGAATTCCAACTGGAACTCTTTATGGAAGGTGCAAAAGGGAAGGAATTGAACTTAGTAGAAGTAATCCTACTCCGTGGAGCGAGGATGCTATGACTGAAGCTCTTGAGGCTGTTAGattgggGCACATGAGTATAAATCAAGCAGCTATTCACTACAACTTGCCGTACTCATCGCTATATGGGCGTTTCAAGAGAGGAAAATACGAAGAGCCAGTAGTCAACGATATGTCGCAGGATGGTAGCAGTCCTCATTATCACCATCAAAGTCCGAGTCAAAATCACACTTCTTCCCTTCCTGATCAAATGCCCTATCAGGACagctga
Protein Sequence: MVQRVGGGRYGPGAATAASEASPILPAGVFAFSASNTRPSPAQPHSQAMASPSPTPTTPPNRATPGLIKEQSPASAGRSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPRESGTTRLNYTKLKRHHPRYKRPRTTFEARNSDSRHHDLYKEEDAEGEFQRDKENHRDCWQTEDEECAEATAAAVVLESCQRDNNNGNGTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKTAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSPHYHHQSPSQNHTSSLPDQMPYQDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00306165;
90% Identity: iTF_00460397;
80% Identity: -