Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: -
Assembly: GCA_963989365.1
Location: OZ022423.1:9230832-9238361[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.4e-12 2.1e-09 37.7 0.0 1 39 356 395 356 399 0.90

2 4 7.5e-12 6.6e-09 36.1 0.1 2 39 411 448 410 451 0.94

3 4 2.7e-18 2.4e-15 56.7 0.0 2 45 466 510 465 510 0.97

4 4 3.3e-18 2.9e-15 56.5 0.0 1 42 517 559 517 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.4e-12	2.1e-09	37.7	0.0	1	39	356	395	356	399	0.90
2	4	7.5e-12	6.6e-09	36.1	0.1	2	39	411	448	410	451	0.94
3	4	2.7e-18	2.4e-15	56.7	0.0	2	45	466	510	465	510	0.97
4	4	3.3e-18	2.9e-15	56.5	0.0	1	42	517	559	517	560	0.97

Sequence Information

Coding Sequence: ATGTTGAATCATCAATCGAATATCGTAAACGAAGCAGAATATCGAAATGTTGATGGAAAGGTCGTAAACTGTACGGAAACATGTCTCCAATATTCTTGGAACGATAAAATGGCTCTGGGAAGTTATGCCTTTGGTAGTAGCCGCCGATTCGGATTGTCAGAGAGTATCGAGCACGTGGTTGCAAAAGGGGTCGTCGCCGTCGTCACCGTCGTCGCCAACGACGACGTCCGTTCATTCAGTAGTAAGAAGTCGTTACTGAAAACGGCCGATCAGTTAAAGATCAAGGGCCTCTGCGAAGTTCCGGAGAGCAGAGAAGGTCCACCCTCAGTCAGCCTGAGCTCACCACCGCCCCGAGATTCTACGGCAACGAGGCTCAACTACACGAAATTAAAGAGGCATCATCCCCGTTATAAGAGACAAAGAACGAGCTTCGAGCCACGAGAGACCAGCGCGGATTCACGTAACTACGACAAGTACAAAGAGGAGGAGCACAACATCGAAGGCCTCGGCCGTGACAACAACAAAGAGAATCACAGAGGTGACTGGCAGACGGAGGATGAGGAGTGCGGAGCGGATGCAGCATCAGTAGTCTTGGAATCCTGTCAACGCGACAGCAACAACGGTAACGGTACAAACAACAATAACGGTGACATGTTCTGTCACACAGGTCTAGGTCATTACGGTCATCATCCCGATCCTGGAGAGGTAGATTTACCCCCGGAGACACAACCAACACCGCCAAGCGCTACTCTCGTCGGTACCACGATAACGCATCTCCGCGATACCGATCATCACTCTACAGatATACAAAATTGCGACAGCGTGAAAATAAAGTTCGAAACTCTGCACACGATGGATTCGTCCGACACGATCGATATCGACAGCCACATGTCCGATCGCGCCAGCGTTAGCTCGAAACATGCCGCTGATAATGACAACATGATGATGATAACACCGGAGCTTTTGGGTTTAATGCCTTCCGGTAGTTCGGTACATTCGGACTCTGGAGAAAACAATTCACGAGGCGGTGGTTCGGGCTCTCATCATCATGGTTCCAAATCTTGGACCCAAGAAGACATGGATGCTGCGCTTGAGGCACTCAGAAATCACGATATGAGCCTCACGAAAGCATCAGCAACATTTGGAATTCCTTCGACGACATTATGGCAAAGAGCTCACAGACTGGGAATCGACACACCGAAAAAAGATGGCCCAACGAAATCATGGAGCGACGAAAGTCTGAACAACGCCCTTGAGGCATTAAGAACAGGGACGATATCAGCGAACAAAGCGTCAAAAGCATTCGGCATACCATCCAGTACGCTTTACAAAATCGCGCGAAGAGAAGGTATTAGACTTGCGGCTCCATTCAACGCTAGTCCGACGACATGGTCACCGGCCGATCTCGACAGAGCACTTGAAGCTATTAGGTCCGGTCAGACATCGGTACAAAGAGCGTCGACGGAATTTGGTATTCCAACGGGTACATTGTACGGTAGATGCAAGAGAGAGGGCATAGAATTGAGCCGTAGCAATCCTACACCTTGGAGCGAGGACGCAATGACAGAGGCACTCGAGGCGGTCAGATTGGGTCACATGAGCATCAATCAAGCTGCTATACATTACAATCTACCTTACTCGTCTCTCTACGGGCGCTTCAAGAGGGGAAAGTACGAAGATCCGGTGGTGAGCGAGATGTCACAAGACGGCAACAATCCTCACTTTCATTCGCATCAGAGTCCGCATCAAAATCACTCTTCGTCGCTACCCGATCAAATGCCTTATCAGGGCAGCTGA
Protein Sequence: MLNHQSNIVNEAEYRNVDGKVVNCTETCLQYSWNDKMALGSYAFGSSRRFGLSESIEHVVAKGVVAVVTVVANDDVRSFSSKKSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPPRDSTATRLNYTKLKRHHPRYKRQRTSFEPRETSADSRNYDKYKEEEHNIEGLGRDNNKENHRGDWQTEDEECGADAASVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKHAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGGGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVSEMSQDGNNPHFHSHQSPHQNHSSSLPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00460397;
80% Identity: -