Ldro005313.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065478.1:76573522-76591467[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-12 7e-09 36.6 0.0 1 39 279 318 279 322 0.90 2 4 4.4e-12 8.1e-09 36.4 0.1 2 39 334 371 333 374 0.94 3 4 1.6e-18 2.9e-15 57.0 0.0 2 45 389 433 388 433 0.97 4 4 1.9e-18 3.5e-15 56.7 0.0 1 42 440 482 440 483 0.97
Sequence Information
- Coding Sequence
- atgaattttttcgttgTCTTGTTTCAGTCCCTGCTGAAGACGGCTGATCAGCTGAAAATCAAGGGCCTCTGTGAGGTCCCAGAGAGCAGAGAGGGACCGCCTTCGGTTAGCCTCAGCTCACCACCGCGAGAATCCAGCACCACCAGACTAAACTATACAAAGCTAAAGAGGCATCATCCGAGGTACAAGAGGCCAAGAACCACTTTCGAGACTCGCAACTCGGATTCCAGGCATCAAGACTTGTACAAGGAGGAGGACGCAGAAGGAGATTTTGAGCGCGACAAAGAGAATCACAGGGACTGTTGGCAGACCGAAGATGAGGAGTGTGCGGAGGTTGCATCAGCAGTAGTCCTGGAATCCTGCCAACGCGACAATAACAACGGTAACAGTACTACAAACAACAACAACGGTGACATGTTCTGTCACACAGGTTTAGGTCATTACGGTCATCATCCAGATCCTGGTGAAGTGGATTTACCTCCGGAAACGCAGCCAACACCACCTAGTGCAACCCTCGTCGGCACAACAATCACACATCTCAGGGATTCAGACCATCAATCAGCAGAGATCCAAAATTGCGACAGTGTGAAGATAAAATTCGAGACCTTGCACACAATGGATTCGTCGGACACAATAGACATTGACAGTCATATGTCAGACAGAGCGAGTGTGAGTTCGAAAAATGCGGGAGACAACGATAATATGATGATGATAACGCCCGAACTCCTTGGGCTTATGCCTTCTGGAAACTCCGTCCATTCGGATTCTGGGGAGAATAACTCTAGAGGTCATTCGGGTCAATCGGGATCTCATCATCATGGATCGAAATCATGGACGCAGGAAGACATGGATGCGGCTCTTGATGCTTTGAGGAATCATGACATGAGTCTGACAAAGGCATCTGCAACCTTTGGCATACCCTCGACCACTCTGTGGCAAAGAGCTCATCGCCTAGGAATCGACACTCCCAAGAAGGATGGACCAACAAAATCGTGGAGTGACGAGAGTCTGAATAACGCACTCGAAGCCTTAAGAACAGGGACAATTTCCGCAAATAAGGCATCGAAAGCTTTTGGAATACCTTCTAGTACTTTGTATAAAATTGCCAGGCGAGAAGGTATCAGACTCGCGGCGCCGTTCAATGCAAGTCCCACCACATGGTCACCGGCTGATCTCGACAGGGCATTGGAGGCAATCAGATCCGGTCAAACGTCAGTGCAGAGAGCGTCGACAGAATTTGGAATTCCAACCGGCACACTCTATGGACGATGCAAGCGAGAGGGAATTGAACTCAGCAGGAGTAATCCCACTCCGTGGAGCGAGGACGCGATGACCGAGGCTCTTGAGGCTGTCAGGCTGGGACATATGAGTATAAACCAAGCCGCAATTCACTACAATTTACCCTATTCGTCATTGTACGGACGTTTCAAGAGGGGTAAATACGAAGATCCAGTAGTCAACGAAATGTCGCAAGACGGCAGCAGTCcgcattatcatcatcatcaaagTCCAAGTCAAAATCATTCTTCTTCCCTTCCGGATCAAATGCCCTACCAGGGTAGCTGA
- Protein Sequence
- MNFFVVLFQSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPRESSTTRLNYTKLKRHHPRYKRPRTTFETRNSDSRHQDLYKEEDAEGDFERDKENHRDCWQTEDEECAEVASAVVLESCQRDNNNGNSTTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSAEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVNEMSQDGSSPHYHHHQSPSQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00460397;
- 80% Identity
- -