Cpar004401.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephus parvus
Gene Symbol
-
Assembly
GCA_030142435.1
Location
JARQTA010000430.1:1228532-1231993[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.027 2.2 9.3 4.3 2 23 292 314 291 314 0.96
2 13 2.3e-05 0.0019 18.9 2.1 1 23 320 342 320 342 0.98
3 13 0.0007 0.058 14.2 2.8 1 23 348 370 348 370 0.97
4 13 2.3e-06 0.00019 22.1 2.1 1 23 376 398 376 398 0.99
5 13 0.17 14 6.7 0.0 1 13 409 421 409 428 0.89
6 13 2.1 1.7e+02 3.3 5.0 1 20 451 470 451 473 0.94
7 13 0.0065 0.54 11.2 0.1 1 23 479 501 479 501 0.95
8 13 0.00056 0.046 14.5 0.2 2 21 549 568 548 569 0.93
9 13 0.032 2.6 9.0 0.1 2 23 577 598 576 598 0.95
10 13 1.5e-07 1.2e-05 25.8 1.2 1 23 608 630 608 630 0.99
11 13 0.0041 0.34 11.8 0.4 1 23 636 658 636 658 0.98
12 13 0.00036 0.03 15.1 0.7 1 23 664 686 664 686 0.98
13 13 0.00064 0.053 14.3 2.5 1 23 692 715 692 715 0.98

Sequence Information

Coding Sequence
ATGAATGCCTTAATAGAAGATTCACATGGCGAATTAATCACTATATCCATTCAAGAAACAGACACATTCCGGGAGctaaataaacgaataaaaaaagaatatggaTTACAAATGGACTTTACCAATTTACATGGCTATAGCAGTATTGATTTAGACGAGAATATTCTTGCTTCTCTGGCAAAAAATGATCAATTAGTTTCAATAAATACAGACACATCCTTTTCAAATCACACTGAAAGTGTCATAGAAGAACCTATAGATAAAGAATGCATCTTGAAAGTACAACCTGATGAAGCTAATGTGGTTGTATATGCGAATGACATAGACATACGTGCAACTTCAGAAAATGATGATGCTATTGAAATGCATAAAAGTTATCAGCTCATAACATTGGATTCAGGAATAGAACTTGATCAGCAggtgttaattaattctacaGACGAGAATGTTTTTCTTCACGCAGACGATTCGGAAATCACAGAATTAATGAGTTtaggaaataataaacgatCATACTCTAAAGATACAACACAAACAAATACTAAagtaattttagaaattactAATGATGTGGCTTCACCTTTATGTCGACTTTGTGCCAATAAAAGTGATGAaatggtatatatttttggaagaACTGAATCAAAAAAGGAAATAgcagaaaaaattgatgattgCCTTCCCATTACAGTGAGCAAGATGGATACTCTTCCAAAACAAGTGTGTCATTCATGTTTAGAGAAACTTGAGATGtgttatgaatttcataaaactgTAGTAGAAGCAGAAGCAAGTTTTGTCAAAATGGATTATGGAAAATTGATGCAAACAAGAAAAACTTGTCCACTTTGCAGACAAAAAGCAAGACCATGTTATTGTGACAAATGTGATAAATTCATGGTATCTGAGTCATCTCTATACCATCATTTAAAAACAGTTCATTTGCAGTACAAAGAATTTTGTTGTGATATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAATGTACAATATGCAAAAAGCGCTTCTActctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTATCAGTGCGATCAATGCGGCAAGCGATTTGACAGAACAAATACATTGACCAAGCATCTTCTGAGACACCAAGTAGAAGCAGGCAGATCAATGACATGTTACGTGTGTACAGGATGCAATGAAGTTTTTATCGATTCACTCAGTGGGAATTTGCACATTGATAACTGTATCCTGATAAATGATggaaaaaatagtataatagAAGAAAGAACTTTAACGGCCATGTACAGATGCGAGTTTTGTGAAAGATGCtatatagatattaaataCATGAAAATGCACCGAGCTTGCCATACTGGACCGCAACCATACGTATGCACCATATGCGACATAACATACGCAACATATAATCAAGCAACAGCACACAAGTCTGCACATAAAAAATCCTCAAAGGAAGTAAACGTCAAGGAAGATGTAGTAatcccaaaatatttttcatgcgaATGCTGCAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGATATTGTGgctttgtttttgaaaatgccaAAGAGCTTTCAAGGCacaagaaaggaaaagacaaCGAGGAAACATGGCCTTGCGAGGGCTGCAATATGACATTTGGATCTATCTGCGCACTTGAAATACATAAAGAGATTCACACGAAAGCTTATGCAAATAGAAAACTCTTCAAATGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACTCAATTGACCATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGATAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAAGCCAACGCGAGAAAGGTACACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGcgaaaacacaaaaaaacTCAGCATGGAGTCCAtgaaacaatagaaaatagCAGCGGctcattgaaaattgattaa
Protein Sequence
MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFTNLHGYSSIDLDENILASLAKNDQLVSINTDTSFSNHTESVIEEPIDKECILKVQPDEANVVVYANDIDIRATSENDDAIEMHKSYQLITLDSGIELDQQVLINSTDENVFLHADDSEITELMSLGNNKRSYSKDTTQTNTKVILEITNDVASPLCRLCANKSDEMVYIFGRTESKKEIAEKIDDCLPITVSKMDTLPKQVCHSCLEKLEMCYEFHKTVVEAEASFVKMDYGKLMQTRKTCPLCRQKARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMTCYVCTGCNEVFIDSLSGNLHIDNCILINDGKNSIIEERTLTAMYRCEFCERCYIDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEDVVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCEGCNMTFGSICALEIHKEIHTKAYANRKLFKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETIENSSGSLKID