Basic Information

Insect: Calameuta pygmaea
Gene Symbol: -
Assembly: GCA_031762395.1
Location: JASANN010000205.1:358293-361775[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.86 62 4.4 2.1 2 14 299 311 298 320 0.78

2 15 0.00027 0.019 15.4 0.4 1 21 326 346 326 348 0.91

3 15 0.027 1.9 9.1 4.3 2 23 356 378 355 378 0.96

4 15 2.4e-05 0.0017 18.7 2.1 1 23 384 406 384 406 0.98

5 15 0.00071 0.051 14.1 2.8 1 23 412 434 412 434 0.97

6 15 2.3e-06 0.00016 21.9 2.1 1 23 440 462 440 462 0.99

7 15 1.2 85 3.9 0.1 1 15 473 487 473 493 0.84

8 15 1.8 1.3e+02 3.4 5.1 1 20 515 534 515 537 0.94

9 15 0.0066 0.47 11.0 0.1 1 23 543 565 543 565 0.95

10 15 0.00057 0.041 14.4 0.2 2 21 613 632 612 633 0.93

11 15 0.12 8.4 7.1 0.1 2 23 641 662 640 662 0.94

12 15 1.5e-07 1.1e-05 25.7 1.2 1 23 672 694 672 694 0.99

13 15 0.0041 0.3 11.7 0.4 1 23 700 722 700 722 0.98

14 15 0.00037 0.026 15.0 0.7 1 23 728 750 728 750 0.98

15 15 0.00065 0.047 14.2 2.5 1 23 756 779 756 779 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.86	62	4.4	2.1	2	14	299	311	298	320	0.78
2	15	0.00027	0.019	15.4	0.4	1	21	326	346	326	348	0.91
3	15	0.027	1.9	9.1	4.3	2	23	356	378	355	378	0.96
4	15	2.4e-05	0.0017	18.7	2.1	1	23	384	406	384	406	0.98
5	15	0.00071	0.051	14.1	2.8	1	23	412	434	412	434	0.97
6	15	2.3e-06	0.00016	21.9	2.1	1	23	440	462	440	462	0.99
7	15	1.2	85	3.9	0.1	1	15	473	487	473	493	0.84
8	15	1.8	1.3e+02	3.4	5.1	1	20	515	534	515	537	0.94
9	15	0.0066	0.47	11.0	0.1	1	23	543	565	543	565	0.95
10	15	0.00057	0.041	14.4	0.2	2	21	613	632	612	633	0.93
11	15	0.12	8.4	7.1	0.1	2	23	641	662	640	662	0.94
12	15	1.5e-07	1.1e-05	25.7	1.2	1	23	672	694	672	694	0.99
13	15	0.0041	0.3	11.7	0.4	1	23	700	722	700	722	0.98
14	15	0.00037	0.026	15.0	0.7	1	23	728	750	728	750	0.98
15	15	0.00065	0.047	14.2	2.5	1	23	756	779	756	779	0.98

Sequence Information

Coding Sequence: ATGAATGCCTTAATAGAAGATTCACACGGCGAATTAATCACTATATCCATTCAAGAAACAGACACATTCCGGGAGCTGaataaacgaattaaaaaagaatatggcTTGCAAATGGACTTTACCAATTTACACGGCTATAGTAGTATTGATTTAGATGAGAACATTCTTGCTTCGCTGTCAAAAAATGATCAATtagtttcaataaatacaGATACATCCCTTTCAAATCATACTGAAAGTGTCATAGAAGAATCTATAGATGAAGAATGCATCTTGAAAGTACAACCTGATGAAGCTAATGTGGTTGTTTATGCGAACgacatagatatacatgcaACTTCAGAAAATGATGAAGCTATTGAAATGCATAAAAGTTATCAGCTCATAGCATTGGATTCAGGAATAGAACTTGATCAGCAggtgttaattaattctacagACGAGAATGTTTTTCTTCACGCGGACGATTCGGAAATCACAGAATTAATGAGTTtaggaaataataaacgatCATACTCTAAAGATACAATACAAGCAAATACTAaagtaattttagaaattactaATGACGTGGCTTCACCTTTATGTCGACTTTGTGCCAATAAAAGTGATGAaatggtatatatttttggaacaaCTGaatcaaaaaaggaaatagCAGAAAAAATCGATGATTGTCTTCCCATTGCAGTGAGCAAGATGGATACTCTTCCAAAACAAGTGTGTCATTCATGTTTAGAAAAACTTGAGATGTgttatgaatttcataaaactgTAGTAGAAGCAGAAGCAAGTTTTGTCAAAATGGATTATGGAAAATTGTTGCAGACAAGAATGACCAGAAAAACTTGCCCACTTTGCAGACAAAACAATAGGGGAGACTGTAATGCAATAAAATGCCGTATTTGTGGAGAAACTTTTGAGAccacaaaaaaatgttacatgCACTCAAGCATTCATGCTATGGACGGTTACTATCCTTGTAGTCTTTGcgaaaaaacatttataaatgAGGAAAATTACAATAAGCACAGCGTAGAGCACACTGAAGAAGCAAGGCCATGTTATTGTGACAAATGTGATAAATTCATGGTATCTGAGTCATCTCTATACCATCATTTAAAAACAGTTCATTTGCAGTACAAAGAGTTTTGTTGTGACATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAGTGTACAATATGCAAAAAGCGCTTCTactctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTATCAATGCGATCAATGCGGCAAGCGATTTGACAGAACAAATACTTTGACCAAGCATCTTCTGAGACACCAAGTAGAAGCAGGCAGATCAATGATATGTTACGTGTGCACAGCATGCAATGAAGTTTTTATCGATTCATTCAGTGGAAATTTGCACATTGATAACTGCATTCTGACAAATGATggaaaaaatagtataatagAAGAAAGGACTTTAACGGCCATGTACAGATGCGAGTTTTGTGAAAGATGCTATGTAGATATTAAATACATGAAAATGCACCGAGCTTGCCATACCGGACCGCAACCATACGTATGCACCATATGCGACATAACATACGCAACATATAATCAAGCAACAGCACACAAGTCTGCACATAAAAAATCCTCAAAGGAAGTAAACGTCAAGGAAGATATAGTTAtccctaaatatttttcatgcgaATGCTGCAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCATGTGCCAGTGGTAAAAACTGGACTTGTAGATATTGTGgctttgtttttgaaaatgccaAAGAGCTTTCAAGGCAcaagaaaggaaaagacaaTGAGGAAACATGGCCTTGCGTGGGCTGTAATATGACATTTGGATCTATCTGTGCACTTGAAATACATAAAGAGATTCACACGAAAGCTTATGCAAATAGAAAACTCTTCAAATGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACGCAATTGACCATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGACAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTGTGTGAACGCGCCTTTAAAAAGGCCAACGCGAGAAAGGTTCACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGcgaaaacacaaaaaaactCAGCATGGAGTGcatgaaacaaaagaaaatagcagCGGctcattgaaaaatgattaa
Protein Sequence: MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFTNLHGYSSIDLDENILASLSKNDQLVSINTDTSLSNHTESVIEESIDEECILKVQPDEANVVVYANDIDIHATSENDEAIEMHKSYQLIALDSGIELDQQVLINSTDENVFLHADDSEITELMSLGNNKRSYSKDTIQANTKVILEITNDVASPLCRLCANKSDEMVYIFGTTESKKEIAEKIDDCLPIAVSKMDTLPKQVCHSCLEKLEMCYEFHKTVVEAEASFVKMDYGKLLQTRMTRKTCPLCRQNNRGDCNAIKCRICGETFETTKKCYMHSSIHAMDGYYPCSLCEKTFINEENYNKHSVEHTEEARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMICYVCTACNEVFIDSFSGNLHIDNCILTNDGKNSIIEERTLTAMYRCEFCERCYVDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEDIVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCVGCNMTFGSICALEIHKEIHTKAYANRKLFKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETKENSSGSLKND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00294715;
90% Identity: iTF_01474919;
80% Identity: iTF_00253043;