Tsti004215.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus stipa
Gene Symbol
-
Assembly
GCA_036026315.1
Location
JAYRCB010000340.1:1174158-1177618[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.83 80 4.5 2.0 2 14 299 311 298 320 0.78
2 16 0.00058 0.056 14.5 0.2 1 23 326 348 326 348 0.93
3 16 0.0082 0.79 10.8 0.8 1 23 361 383 361 383 0.89
4 16 0.03 3 9.1 4.3 2 23 391 413 390 413 0.96
5 16 2.7e-05 0.0026 18.7 2.1 1 23 419 441 419 441 0.98
6 16 0.0008 0.078 14.0 2.8 1 23 447 469 447 469 0.97
7 16 2.6e-06 0.00025 21.9 2.1 1 23 475 497 475 497 0.99
8 16 0.19 18 6.6 0.0 1 13 508 520 508 527 0.89
9 16 2.4 2.3e+02 3.1 5.0 1 20 550 569 550 572 0.94
10 16 0.0075 0.72 11.0 0.1 1 23 578 600 578 600 0.95
11 16 0.00064 0.062 14.3 0.2 2 21 648 667 647 668 0.93
12 16 0.036 3.5 8.8 0.1 2 23 676 697 675 697 0.95
13 16 1.7e-07 1.6e-05 25.6 1.2 1 23 707 729 707 729 0.99
14 16 0.0047 0.45 11.6 0.4 1 23 735 757 735 757 0.98
15 16 0.00012 0.011 16.6 0.7 1 23 763 785 763 785 0.98
16 16 0.00073 0.071 14.1 2.5 1 23 791 814 791 814 0.98

Sequence Information

Coding Sequence
ATGAATGCCTTAATAGAAGATTCACACGGTGAATTAATCACTATATCCATTCAAGAAACAGACACGTTTCGGGAGCTGaataaacgaattaaaaaagaatatggcTTACAAATGGACTTTACCAATTTACATGGCTATAGCAGTATTGATTTAGATGAGAACATTCTTGCTTCTCTGTCAAAAAATGATCAATTAGTTTCAATAAATACAGACACATCCCTTTCAAATCACACTGAAAGTGGTATAGAAGAATCTATAGATGAAGAATGTATCTTGAAAGCACAACCTGATGAAGCTAATGTGGTAGTTTATGCAAATGACATAGACATACATGCAACTTCAGAAACTGATGAAGCTgttgaaatgaataaaagttaTCAGCTCATAACATTGGATTCAGAAATAGAACTTGATCAGCAGGTGTTAATTAATTCTACAGACGAGAATGTTTTTCTTCACGCGGACGATTCGGAAATCACAGAATTAATGAGtttaggaaataataaacGGTCATATTCTAAAGATACAATACAAGCAAATACTAaagtaattttagaaattactAATGACGTGGCTTCACCTTTATGTCGACTTTGTGCCAATAAAAGTGATGAaatggtatatatttttggaacaaCTGAagcaaaaaaggaaatagcagaaaaaatttatgattgcCTTCCCATTGCAGTGAACAAGATGGATACTCTGCCAAAACAAGTGTGTCATTCATGTTTagagaaacttgaaatttgttatgaatttcataaaactgTACTAGAAGCAGAAGCAAGTTTTGTCAAAATGGATTACGAAAAATTGATGCAATCAAGAATGACAACAAAAACTTGCCCACTTTGCAGACAAAacAATAGAGGAGAATGTAATGCAATAAAATGCCGTATATGTGGAGAATCTTTTGAGaccacaaaaaaatgttacatgCACTCAAGCATTCATGCTATGGAAGGTTACTATCCTTGTAGTCTTTgcgaaaaaacatttataaacgAGGAAAATTACAACGAGCACAGCATAGAACACACTGAAGGTAAAAAGTGTGAGCGAAGATCTGCAACATATGCATGTGATGAATGcggtaaaaaatttgttagcGAAGAAAGACTTCAGTTTCATACGAACTTTCACAAACCAGAAGCAAGGCCATGTTATTGTGACAAATGTGATAAATTCATGGTATCTGAGTCATCTCTATACCATCATTTGAAAACAGTTCATTTGCAGTACAAAGAGTTTTGTTGTGACATTTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAACGACCGTTCGAGTGTACAATATGCAAAAAGCGCTTCTActctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTACCAATGCGATCAATGCGGCAAGCGATTTGACAGAACAAACACGTTGACCAAGCATCTTTTAAGACACCAAGTAGAAGCAGGCAGATCAATGATATGTTACGTGTGCACAGGATGCAATGAAGTTTTTATCGATTCACTCAGTGGAAATTTGCACATTGATAACTGCATCCTGACAAATGATGGGAAGAATAGTATAATAGAAGAAAGAACTTTAACGGCCATGTACAGATGCGAGTTTTGTGAAAGATGCtatatagatattaaatacatgaaaatgcACCGAGCTTGTCATACCGGACCGCAACCATACGTATGTACCATATGCGACATAACATATGCAACATATAATCAAGCAACAGCACACAAGTCTGCGCATAAAAAATCCTCAAAGGAAGTAAACGTCAAGGAAGATATagtaattccaaaatatttttcatgcgaATGCTGTAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGATATTGTGGCTTCGTTTTTGAAAATGCCAAAGAGCTTTCAAGGCacaagaaaggaaaagacaaCGAGGAAACATGGCCTTGCGAGGGCTGCAATATGACATTTGGATCTATCTGTGCACTTGAAATACATAAAGAGATTCACACGAAAGCTTATGCAGATAGAAAACTCTTCAAATGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACGCAATTAACTATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGATAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTTTGTGATCGCGCCTTTAAAAAGGCCAACGCGAGAAAGGTACACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGcgaaaacacaaaaaaacacAGCATGGAGTGCAtgaaacaatagaaaatagcAGCGGctcattgaaaattgattaa
Protein Sequence
MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFTNLHGYSSIDLDENILASLSKNDQLVSINTDTSLSNHTESGIEESIDEECILKAQPDEANVVVYANDIDIHATSETDEAVEMNKSYQLITLDSEIELDQQVLINSTDENVFLHADDSEITELMSLGNNKRSYSKDTIQANTKVILEITNDVASPLCRLCANKSDEMVYIFGTTEAKKEIAEKIYDCLPIAVNKMDTLPKQVCHSCLEKLEICYEFHKTVLEAEASFVKMDYEKLMQSRMTTKTCPLCRQNNRGECNAIKCRICGESFETTKKCYMHSSIHAMEGYYPCSLCEKTFINEENYNEHSIEHTEGKKCERRSATYACDECGKKFVSEERLQFHTNFHKPEARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMICYVCTGCNEVFIDSLSGNLHIDNCILTNDGKNSIIEERTLTAMYRCEFCERCYIDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEDIVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCEGCNMTFGSICALEIHKEIHTKAYADRKLFKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCDRAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETIENSSGSLKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00294715;
90% Identity
iTF_01474919;
80% Identity
-