Ttab004431.1
Basic Information
- Insect
- Trachelus tabidus
- Gene Symbol
- -
- Assembly
- GCA_030142655.1
- Location
- JARQTI010000396.1:1377467-1380938[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.93 80 4.4 2.1 2 14 299 311 298 320 0.78 2 15 0.0006 0.051 14.4 0.3 1 21 326 346 326 348 0.91 3 15 0.029 2.5 9.1 4.3 2 23 356 378 355 378 0.96 4 15 2.6e-05 0.0022 18.7 2.1 1 23 384 406 384 406 0.98 5 15 0.00077 0.066 14.1 2.8 1 23 412 434 412 434 0.97 6 15 2.5e-06 0.00021 21.9 2.1 1 23 440 462 440 462 0.99 7 15 0.18 16 6.6 0.0 1 13 473 485 473 492 0.89 8 15 2.3 2e+02 3.2 5.0 1 20 515 534 515 537 0.94 9 15 0.0072 0.62 11.0 0.1 1 23 543 565 543 565 0.95 10 15 0.00062 0.053 14.4 0.2 2 21 613 632 612 633 0.93 11 15 0.068 5.9 8.0 0.1 2 23 641 662 640 662 0.95 12 15 5.1e-07 4.4e-05 24.1 0.7 2 23 673 694 672 694 0.97 13 15 0.0045 0.38 11.7 0.4 1 23 700 722 700 722 0.98 14 15 0.00039 0.034 15.0 0.7 1 23 728 750 728 750 0.98 15 15 0.0007 0.061 14.2 2.5 1 23 756 779 756 779 0.98
Sequence Information
- Coding Sequence
- ATGAATGCCTTAATAGAAGATTCACACGGCGAATTAATCACTATATCCATTCAAGAAACAGACACATTCCGGGAGCTGaataaacgaattaaaaaagaatatggcttaaaaatggattttaccAATTTACATGGCTATAGCAGTATTGATTTAGATGAGAACATTCTTGCTTCTCTGTCAAAAAATGATCAATTAGTTTCAATAAATACAGACACGTCCCTTTCAAATCACACTGAAAGTGTCATAGAAGAATCTATAGATGAAGAATGCATTTTGAAAGTACAACCTGATGAAGCTAATATGGTTGTTTATGCAAATGACATAGACATACACGCAACTTCAGAAAATGATGAAGCTATTGAAATGCATAAAAGTTATCAGCTCATAACATTGGATTCAGGAATAGAACTTGATCAGCAggtgttaattaattctacaGACGAGAATGTTTTTCTTCACGCGGACGATTCGCAAATCacagaattattaagtttagGAAACAATAAACGATCATACTCTAAAGATACAATACAAGGAAATACTAAagtaattttagaaattactaATGACGTGGCTTCACCTTTATGTCGACTTTGTGCCAATAAAAGTGATGAaatggtatatatttttggaacaaCTGAatcaaaaaaggaaatagcagaaaaaattgatgattgCCTTCCCATTGCAGTGAGCAAGATGGATACTCTTCCAAAACAAGTGTGTCATTCATGTTTAGAGAAACTTGAGATTTGTTATGAATTTCATAAGACTGTAGTAGAAGCAGAAGCAAGTTTTGTCAAAATGGGTTATGGAAAGTTGATGCAAACAAGAATGACGAGAAAAACTTGCCCACTTTGCAGACAAAGCAATAGGGGAGAATGCAATGCAATAAAATGCCGTATATGTGGAGAAACTTTTGAGAccacaaaaaaatgttacatgcACTCAAGCATTCATACTATGGGCGGTTACTATCCCTGTAGTCTTTGcgaaaaaacatttataaacGAGGAAAATTACAACCAGCACAGCGTAGAACACACTGAAGAAGCAAGGCCATGCTATTGTGACAAATGTGATAAATTCATGGTATCCGAGTCATCTCTATACCATCATTTAAAAACAGTTCATTTGCAGTACAAAGAGTTTTGTTGTGATATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAGTGTACAATATGCAAAAAGCGCTTCTactctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTATCAGTGCGATCAATGCGGCAAGCGATTTGACAGAACAAACACGTTGACCAAGCATCTTTTGAGACACCAAGTAGAAGCAGGCAGATCAATGATATGTTACGTGTGCACAGGATGCAATGAAGTTTTTATCGATTCACTCAGTGGAAATTTGCACATTGATAACTGCATCCTGAGAAATGATGGAGATAATAGTATAATAGAAGAAAGAACTTTAACAGCCATGTACAGATGCGAGTTTTGTGAAAGATGCTACATAGATATTAAATACATGAAAATGCACCGAGCTTGTCATACTGGACCGCAACCATACGTATGTACCATATGCGATATAACATACGCAACATATAATCAAGCAACAGCACACAAGTCTGCACATAAAAAATCCTCAAAGGAACTAAACGTCAAGGAGGATATagtaattccaaaatatttttcatgcgaATGCTGCAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGATATTGTGgctttgtttttgaaaatgccaAAGAGCTTTCAAGGcacaagaaaggaaaagacaaCGAGGAAACATGGCCTTGCGGGGGCTGCAATATGACATTTGGATCTATCTGTGCACTTGAAATACATAAAGAGATTCATTCGAAAGCTTATGCAAATAGAAAACTCTTAAAATGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACGCAATTGACTATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGATAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAGGCCAACGCGAGAAAGGTACACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGGGATATGCgaaaacacaaaaaaaccCAGCATGGAGTGCAtgaaacaatagaaaatagcAGCGGctcattgaaaattgattaa
- Protein Sequence
- MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLKMDFTNLHGYSSIDLDENILASLSKNDQLVSINTDTSLSNHTESVIEESIDEECILKVQPDEANMVVYANDIDIHATSENDEAIEMHKSYQLITLDSGIELDQQVLINSTDENVFLHADDSQITELLSLGNNKRSYSKDTIQGNTKVILEITNDVASPLCRLCANKSDEMVYIFGTTESKKEIAEKIDDCLPIAVSKMDTLPKQVCHSCLEKLEICYEFHKTVVEAEASFVKMGYGKLMQTRMTRKTCPLCRQSNRGECNAIKCRICGETFETTKKCYMHSSIHTMGGYYPCSLCEKTFINEENYNQHSVEHTEEARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMICYVCTGCNEVFIDSLSGNLHIDNCILRNDGDNSIIEERTLTAMYRCEFCERCYIDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKELNVKEDIVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCGGCNMTFGSICALEIHKEIHSKAYANRKLLKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETIENSSGSLKID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294715;
- 90% Identity
- iTF_00253043; iTF_00255305; iTF_01474138;
- 80% Identity
- -