Spar001418.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syrista parreyssii
Gene Symbol
-
Assembly
GCA_030142615.1
Location
JARQTG010000036.1:2167319-2170794[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0027 0.18 12.3 0.3 1 21 259 279 259 281 0.90
2 16 0.0042 0.27 11.7 1.5 1 23 294 316 294 316 0.94
3 16 0.028 1.8 9.1 4.3 2 23 324 346 323 346 0.96
4 16 2.4e-05 0.0016 18.8 2.1 1 23 352 374 352 374 0.98
5 16 0.00074 0.048 14.1 2.8 1 23 380 402 380 402 0.97
6 16 2.4e-06 0.00015 21.9 2.1 1 23 408 430 408 430 0.99
7 16 0.15 10 6.8 0.0 1 13 441 453 441 461 0.85
8 16 2.2 1.4e+02 3.2 5.0 1 20 483 502 483 505 0.94
9 16 0.0068 0.44 11.0 0.1 1 23 511 533 511 533 0.95
10 16 0.00059 0.038 14.4 0.2 2 21 581 600 580 601 0.93
11 16 0.16 10 6.8 0.2 2 23 609 630 608 630 0.95
12 16 1.9e-07 1.2e-05 25.4 1.2 1 23 640 662 640 662 0.99
13 16 0.006 0.39 11.2 0.6 1 23 668 690 668 690 0.98
14 16 5.7e-06 0.00037 20.7 1.9 1 23 696 718 696 718 0.98
15 16 0.00038 0.024 15.0 0.7 1 23 724 746 724 746 0.98
16 16 0.00067 0.043 14.2 2.5 1 23 752 775 752 775 0.98

Sequence Information

Coding Sequence
atgaatgcCTTAATAGAAGATTCACACGGTGAATTAATCACTATATCCATTCAAGAAACAGACACATTTCGGGAGCTGAATAAACGAATTAAGAAAGAATATGGTTTACAAATGGACTTTTCCAATTTACATGGCTACAGCAGTATTGATTTAGACGAGAACATTCTTGCTTCTCTGTCAAAAAATGATCAATtagtttcaataaatacaGACACGTCCCTTTCAAATCATACTGAAAGTGCGATTGAAGAATGTACAGATGAAGAATGCATCTTGAATGTACAACCTGACGAAGCTCATGTAGTTGTTTATGCGAATGACATAGATATAAATGGAACttcagaaaataatgaagctattgaaatacataaaaattatcagctCATAACATTGAATCCAGAAATAGAACTTGATCAGCAGGTGTTAAGTAGTTCTACAGACGATAATGTTTTTCTTCGCACGGATAATTCGGAAATCACAGAATTAATGAGTTTAGGCAACAATAAGTGTTCGTACTCCAAAGATATAATACAAGCAAATAGTAAagtaattttagaaataacaAATGATGTGGCTTTACCTCTATGTCGACTTTGTGCCAATAAAAGCGACGaaatggtatatatttttggaacaACTgagtcaaaaaaagaaatagcagaaaaaattgatgattGTCTTCCCATTGCAgTGAGCAAGATGGATAATCTCCCAAAACAAGTTTGTCATTCATGTTTAGAGAAACTTGAGATCATTCATGCTATGGACAGCTACTATCCATGCAGTCTTTGTGAAAAAACATTTATGAACGAGGAAAACTACAACGAGCACAGCGTAGAACACACTGAAGGTAAAAAGTGCGAGCGAAGATCCGCAACACATGCATGTGACGAATGTGGCAAAAAATTTGTTAGCGAAGAAAGACTTCAGTTTCATATGAACTTTCACAAACCAGAAGCAAGGCCATGCTATTGTGACAAATGTGATAAATTCATGGTATCCGAGTCATCTCTATATCATCATTTAAAAACAGTTCACTTGCAGTACAAAGAGTTTTGTTGTGACATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCTCATCAAAGAAAGCACAAAGATGAACGACCGTTCGAGTGTACAATATGCAAAAAGCGCTTCtattctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTATCAGTGTGATCAATGCGGCAAGAGATTTGACAGAACAAATACGTTGACCAAGCATCTTCTGAGACACCAAGTAGAAGCAGGCAGAACAATGATATGTTACGTGTGCACAGGATGCAACGAAGTTTTTGTCGATGCACTCAGTGGAAATTTGCATATGGATAATTGCATCTTGACAAATGATGGAAAGAATAGtagaatagaagaaagaacTTTAACGGCCATGTACAGATGCGAATTTTGTGAAAGATGctacatagatataaaatacatgaaaatgcaCCGAGCTTGCCATACCGGACCGCAACCATACGTATGCACCATATGCGACATCACATATGCGACGTATAATCAAGCAACAGCACACAAGTCTGCGCATAAAAAATCCTCAAAAGAAGTAAACGTCAAGGAACACATAGTAAtcccaaaatatttttcatgcgaATGCTGCAATAAGCAATTCCTCCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGATATTGTGgctttgtttttgaaaatgctaAGGAGCTTTCAAGGCacaagaaaggaaaagacaaTGAAGAAACATGGCCGTGCGAGAGCTGCAATATGACATTTGGATCTGTCTGTGCActtgaaatacataaagaGATTCATACGAAAGCTTATGCAAATAGAAAACTCTTCAAATGTCTCTACTGTGGAAAAGAGTTTATTCAGAAAACGCAATTGACCATTCATATAAGAAGCCATACTGGTGAGAGACCTTATGCTTGTGACTTCTGTGATAAGGCATACAAAATTAAAGCTGAAAGAGATAATCATCGTAGAACTCATACGGGTGAACGTCCTTTTAAGTGTACACTATGTGACAAAACCTTTACTAATCCTGCTAGACTCCGGGAGCATACAAGATTTCATTCAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAGGCCAACGCAAGAAAAGTACACATGACTATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGCGAAAGCATAAAAAAACTCAGCATGGAGTGCATGACACAATAGAAAATAGTAGGAgctcattgaaaattgattaa
Protein Sequence
MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFSNLHGYSSIDLDENILASLSKNDQLVSINTDTSLSNHTESAIEECTDEECILNVQPDEAHVVVYANDIDINGTSENNEAIEIHKNYQLITLNPEIELDQQVLSSSTDDNVFLRTDNSEITELMSLGNNKCSYSKDIIQANSKVILEITNDVALPLCRLCANKSDEMVYIFGTTESKKEIAEKIDDCLPIAVSKMDNLPKQVCHSCLEKLEIIHAMDSYYPCSLCEKTFMNEENYNEHSVEHTEGKKCERRSATHACDECGKKFVSEERLQFHMNFHKPEARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRTMICYVCTGCNEVFVDALSGNLHMDNCILTNDGKNSRIEERTLTAMYRCEFCERCYIDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEHIVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCESCNMTFGSVCALEIHKEIHTKAYANRKLFKCLYCGKEFIQKTQLTIHIRSHTGERPYACDFCDKAYKIKAERDNHRRTHTGERPFKCTLCDKTFTNPARLREHTRFHSGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHDTIENSRSSLKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00294715;
90% Identity
-
80% Identity
-