Tiud004370.1
Basic Information
- Insect
- Trachelus iudaicus
- Gene Symbol
- -
- Assembly
- GCA_030142595.1
- Location
- JARQTH010000301.1:1039642-1043107[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 74 4.1 2.7 2 19 372 389 371 393 0.76 2 15 0.00078 0.053 14.0 0.5 1 23 399 421 399 421 0.91 3 15 0.029 2 9.0 4.3 2 23 429 451 428 451 0.96 4 15 2.7e-05 0.0018 18.6 2.1 1 23 457 479 457 479 0.98 5 15 0.00081 0.055 13.9 2.8 1 23 485 507 485 507 0.97 6 15 2.6e-06 0.00018 21.8 2.1 1 23 513 535 513 535 0.99 7 15 0.19 13 6.5 0.0 1 13 546 558 546 565 0.89 8 15 2.4 1.6e+02 3.0 5.0 1 20 588 607 588 610 0.94 9 15 0.0075 0.51 10.9 0.1 1 23 616 638 616 638 0.95 10 15 0.00064 0.044 14.3 0.2 2 21 686 705 685 706 0.93 11 15 0.38 26 5.5 0.2 2 23 714 735 713 735 0.94 12 15 1.7e-07 1.1e-05 25.5 1.2 1 23 745 767 745 767 0.99 13 15 0.0047 0.32 11.5 0.4 1 23 773 795 773 795 0.98 14 15 0.00041 0.028 14.9 0.7 1 23 801 823 801 823 0.98 15 15 0.00074 0.05 14.1 2.5 1 23 829 852 829 852 0.98
Sequence Information
- Coding Sequence
- ATGAATGCCTTAATAGAAGATTCACACGGCGAATTAATCACTATATCCATTCAAGAAACAGACACATTCCGGGAGTTGAATAAACGAATTAACAAAGAATATGGCTTACAAATGGACTTTACCAATTTACATGGCTATAGCAGTATTGATTTAGATGAGAACATTCTTGCTTCTCTGTCAAAAAATGATCAATTAGTTTCAATAAATACAGACACATCCCTTTCAAGTCACACTGAAAGTGTCATAGAAGAATCTATAGATGAAGAATGCATCTTGAAAGTACAACCTGATGAATCTAATGTGGTTGTTTATGCAAATGACATAGACATACATGCAACTTCAGAAAATGATGAAGCTATTGAAATGCATAAAAGTTATCAGCTCGTAACATTGGATTCAGGAATAGAACTTGATCAGCAGgtgttaattaattctacAGAGGAGAATGTTTTTCTTCACGCGGATGATTCGGAAATCACAGAAATAATGAGTttaggaaataataaacggTCATACCCAAAAGATACAATGCAAGAAAATACTAaagtaattttagaaattactAATAACGTGGCTTCACCTTTGTGTCGACTTTGTGCCAATAAAAGTGATGAaatggtatatatttttggaacaACTGAatcaaaaaaggaaatagcagaaaaaattgatgattgCCTTCCCATTGCAGTGAGCAAGATGGATACTCTTCCGAAACAAGTGTGTCATTCATGTTTAGAGAAACTTGAGATGTgttatgaatttcataaaactgTAGTAGAAGCAGAAGCAAGTTTTGTCAAAATGGATTACGGAAAATTGATGCAAACAAGAATGACGAGAAAAACTTGCCCACTTTGCAGACAAAGTACAGCTAGAATAAATACTGATCCAGACAATATTATTTCTCTGGCTGATAATAATATCGCTGAaccactttcttctcttcaattaaaagaaatggGTATTATCGACACAACGGAAATGAACAAATCTTCATCCAAAGATGAAACagaatatatggaaaattatattacgagAGATGAGCATTCAAGTGGCTGGCCAATGGCTAATGAACAAATCAAAAACAATAGGAGAGAATGTAATGCAATAAAATGCCGTATATGTGGAGAAACTTTTGAGAccacaaaaaaatgttacacgCACTCAAGCATTCATGCTACGGACGATTACTATCCTTGTAGTCTTTGcgaaaaaacatttataaacGAGGAAAATTACAAGGAGCACAGCACAGACCACACTGAAGAAGCAAGGCCATGTTATTGTGAAAAATGTGATAAATTCATGGTATCTGAGTCATCTCTATACCATCATTTAAAAACAGTTCATTTGCAGTACAAAGAGTTTTGTTGTGACATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAGTGTACAATATGCAAAAAGCGCTTCTactctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCCGATAAACCTTATCAGTGCGATCAATGCGGCAAGCGATTTGACAGAACAAACACGTTGACTAAGCATCTTTTGAGACACCAAGTAGAAGCAGGCAGATCAATGATATGTTACGTGTGCACAGGATGCAACGAAGTTTTTATCGATTCGCTCAGTGGAAATTTGCACATTGATAACTGCATCCTGACAAATGATGggaaaaatagtataatagaagaaagaaCTTTAACGGCCATGTACAGATGCGAGTTTTGTGAAAGATGCTATATAGACattaaatacatgaaaatgcATCGAGCTTGTCATACCGGGCCGCAACCATACGTATGTACGATATGCGACATAACATATGCAACATATAATCAAGCAACAGCACACAAGTCTGCGCATAAAAAATCCTCAAAGGAAGTAAACGTCAAGGAGGATATAGTAatcccaaaatatttttcatgcgaATGCTGCAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGATATTGTGgctttgtttttgaaaatgccAAAGAGCTTTCAAGGCacaagaaaggaaaagacaaCGAGGAAACGTGGCCTTGCGAGAGCTGcaatatgaaatttggatCTATCTGTGCACTTGAAATACACAAAGAGATTCACACGAAAGCTTATGCAAATAGAAAACTCTTCAAGTGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACGCAATTGACTATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGATAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAAGCCAACGCGAGAAAGGTACACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGCGAAAACACAAAAAAACTCAGCATGGAGTGCAtgaaacaatagaaaataGCAGCGgctcattgaaaattgattaa
- Protein Sequence
- MNALIEDSHGELITISIQETDTFRELNKRINKEYGLQMDFTNLHGYSSIDLDENILASLSKNDQLVSINTDTSLSSHTESVIEESIDEECILKVQPDESNVVVYANDIDIHATSENDEAIEMHKSYQLVTLDSGIELDQQVLINSTEENVFLHADDSEITEIMSLGNNKRSYPKDTMQENTKVILEITNNVASPLCRLCANKSDEMVYIFGTTESKKEIAEKIDDCLPIAVSKMDTLPKQVCHSCLEKLEMCYEFHKTVVEAEASFVKMDYGKLMQTRMTRKTCPLCRQSTARINTDPDNIISLADNNIAEPLSSLQLKEMGIIDTTEMNKSSSKDETEYMENYITRDEHSSGWPMANEQIKNNRRECNAIKCRICGETFETTKKCYTHSSIHATDDYYPCSLCEKTFINEENYKEHSTDHTEEARPCYCEKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMICYVCTGCNEVFIDSLSGNLHIDNCILTNDGKNSIIEERTLTAMYRCEFCERCYIDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEDIVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCESCNMKFGSICALEIHKEIHTKAYANRKLFKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETIENSSGSLKID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294715;
- 90% Identity
- -
- 80% Identity
- -