Psmy004205.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachycephus smyrnensis
Gene Symbol
-
Assembly
GCA_030142225.1
Location
JARQST010000285.1:1429935-1433396[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0041 0.3 11.8 1.5 1 23 264 286 264 286 0.94
2 15 0.028 2 9.2 4.3 2 23 294 316 293 316 0.96
3 15 2.4e-05 0.0018 18.8 2.1 1 23 322 344 322 344 0.98
4 15 0.00073 0.053 14.2 2.8 1 23 350 372 350 372 0.97
5 15 2.3e-06 0.00017 22.0 2.1 1 23 378 400 378 400 0.99
6 15 0.15 11 6.8 0.0 1 13 411 423 411 431 0.84
7 15 5.7 4.2e+02 1.9 5.7 1 20 453 472 453 475 0.92
8 15 0.0068 0.5 11.1 0.1 1 23 481 503 481 503 0.95
9 15 0.00058 0.043 14.5 0.2 2 21 551 570 550 571 0.93
10 15 0.15 11 6.8 0.2 2 23 579 600 578 600 0.95
11 15 4.9e-07 3.6e-05 24.1 0.9 1 23 610 632 610 632 0.98
12 15 0.0042 0.31 11.8 0.4 1 23 638 660 638 660 0.98
13 15 7.4e-06 0.00054 20.4 1.2 1 23 666 688 666 688 0.98
14 15 0.00037 0.027 15.1 0.7 1 23 694 716 694 716 0.98
15 15 0.00033 0.024 15.2 4.0 1 23 722 745 722 745 0.98

Sequence Information

Coding Sequence
ATGAATGCCTTAATAGAAGATTCACACGGCGAGTTAATCACTATATCCATTCAAGAAACAGATACATTCCGTGAGctaaataaacgaataaagaaagaatatggCTTACAAATGGACTTTACCAATTTACATGGCTATAGTAACATTGATTTAGATGAAAACATTCTTGCTTCCCTGTCAAAAAATGATCAGTTAGTTTCAATAAATACAGACGCATCCCTTTCAAATCATACTGAAAGTGCGATAGAAGAACCTGCAGATGAAGAATGCATCTTGAATGAACAATCTGACGAAACTAATGTGGTTGTTTATGCGAATGACATAGACATAAATGGAACTTCAGAACATGATGAAGCTATTGAAATACACAAGAGTTATCAGCTCATAACATTGGATCCAGAAATGGAACTTGATGAGCAGgtgttaattaattctacAGACGAGAATGTTTTTCTTCGCACGGACCATTCGAAAATCAcagaattaataaatccaGGACACGATAAACGTCCATACGCCAAAGATACCATACAAGCAAATAGTAAAgtaattttagaaattacGAATGACGTGGCTTCACCTCTATGTCGACTTTGTGCCAATAGAAGTGACGAaatggtatatatttttggaacaactgaattgaaaaaggaaatagcagaaaaaattgataattgcCTTCCCATTGCGGTGAGCAAGACGGATACTCTTCCAAAACAAGAGGAAGACTACAACGAGCACAGCGTAGAACACACTGAAGGTAAAAAGTGTGAGCGAAGATCTGCAACACATGCATGTGATGAATGTGGCAAGAAATTTGTTAGCGAGGAAAGACTTCAGTTTCATATGAACTTTCACAAACCAGAAGCAAGGCCATGTTATTGCGACAAGTGTGATAAATTTATGGTATCCGAGTCATCTCTTTATCATCATTTAAAAACAGTTCACTTGCAGTACAAAGAGTTTTGTTGTGACATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCTCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAGTGTACAATATGCAAAAAGCGCTTCTATTCGAATGAAATCTTAAAAAGGCACAAAAAGCTACATCTTCCTGATAAACCTTATCAGTGTGATCAATGCGGCAAGAGATTTGACAGAACAAATACGTTGACCAAGCATCTTCTAAGACACCAAGTAGAAGCAGGCAGATCAATGATATGTTACGTTTGCACAGGATGCAACGAAGTTTTTATCGATGCACTCAATGGAAATTTGCACATTGATAACTGCATCCTGACAAATGATGGAAAGGATAGTaaaatcgaagaaagaaatttaacaGCCATGTACAGATGCGAATTTTGTGAAAGATGCTACACAGAAATTAAGTACATGAAAATGCACCGAGCTTGCCATACCGGACCGCAACCATACGTATGCACCATTTGCGACATCACATATGCGACATACAATCAAGCAACAGCACATAAGTCTGCCCACAAAAAATCCTCAAAAGAAGTAAACGTCAAGGAAGACATAGTAATcccaaaatatttctcatgcgAATGCTGCAGTAAGCAATTTCTCCACTTCACCAATATGAATATTCACAGAAAAGCATGTGTCAGTGGTAAAAACTGGACTTGTCGATATTGTGgctttgtttttgaaaatgctaAGGAGCTTTCAAGAcacaagaaaggaaaagacaaTGAAGAAACATGGCCTTGCGAGAGCTGCAATATGACATTTGGATCTGTCTGTGCACTTGAAATACATAAAGAGATTCATACGAAAGCTTATGCAAATAGAAAACTCTTCAACTGTCTCTACTGTGGGAAAGAGTTTGTTCAGAAAACGCAATTGACCATTCATATAAGAAGTCATACTGGTGAAAGACCTTATGCTTGTGACTTATGTGATAAGGCGTACAAAATCAAAGCTGAAAGGGATAATCATCGTAGAACTCATACGGGTGAACGTCCTTTTAAGTGCACACTATGTGACAAAGCCTTTACTAATCCTGCTAGACTCCGGGAGCATACAAGATTTCATTCAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAAGCCAACGCAAGAAAGGTACACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACACATTTTAGAAGAATGGGTGATATGCGAAAGCACAAAAGAACTCAGCACGGAGTGCAAGGAACAATAGAAAATAGCAACGgttcattgaaaattgattaa
Protein Sequence
MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFTNLHGYSNIDLDENILASLSKNDQLVSINTDASLSNHTESAIEEPADEECILNEQSDETNVVVYANDIDINGTSEHDEAIEIHKSYQLITLDPEMELDEQVLINSTDENVFLRTDHSKITELINPGHDKRPYAKDTIQANSKVILEITNDVASPLCRLCANRSDEMVYIFGTTELKKEIAEKIDNCLPIAVSKTDTLPKQEEDYNEHSVEHTEGKKCERRSATHACDECGKKFVSEERLQFHMNFHKPEARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMICYVCTGCNEVFIDALNGNLHIDNCILTNDGKDSKIEERNLTAMYRCEFCERCYTEIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEDIVIPKYFSCECCSKQFLHFTNMNIHRKACVSGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCESCNMTFGSVCALEIHKEIHTKAYANRKLFNCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGERPFKCTLCDKAFTNPARLREHTRFHSGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTHFRRMGDMRKHKRTQHGVQGTIENSNGSLKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00294715;
90% Identity
iTF_01199598;
80% Identity
-