Basic Information

Insect: Cephus nigrinus
Gene Symbol: -
Assembly: GCA_030142395.1
Location: JARQSZ010000395.1:1199713-1203172[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.026 2.1 9.2 4.3 2 23 324 346 323 346 0.96

2 13 2.3e-05 0.0019 18.8 2.1 1 23 352 374 352 374 0.98

3 13 0.00069 0.056 14.2 2.8 1 23 380 402 380 402 0.97

4 13 2.2e-06 0.00018 22.0 2.1 1 23 408 430 408 430 0.99

5 13 0.16 13 6.7 0.0 1 13 441 453 441 460 0.89

6 13 2 1.7e+02 3.2 5.0 1 20 483 502 483 505 0.94

7 13 0.0064 0.52 11.1 0.1 1 23 511 533 511 533 0.95

8 13 0.00055 0.045 14.5 0.2 2 21 581 600 580 601 0.93

9 13 0.031 2.5 9.0 0.1 2 23 609 630 608 630 0.95

10 13 1.4e-07 1.2e-05 25.7 1.2 1 23 640 662 640 662 0.99

11 13 0.004 0.33 11.8 0.4 1 23 668 690 668 690 0.98

12 13 0.00035 0.029 15.1 0.7 1 23 696 718 696 718 0.98

13 13 0.00063 0.051 14.3 2.5 1 23 724 747 724 747 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.026	2.1	9.2	4.3	2	23	324	346	323	346	0.96
2	13	2.3e-05	0.0019	18.8	2.1	1	23	352	374	352	374	0.98
3	13	0.00069	0.056	14.2	2.8	1	23	380	402	380	402	0.97
4	13	2.2e-06	0.00018	22.0	2.1	1	23	408	430	408	430	0.99
5	13	0.16	13	6.7	0.0	1	13	441	453	441	460	0.89
6	13	2	1.7e+02	3.2	5.0	1	20	483	502	483	505	0.94
7	13	0.0064	0.52	11.1	0.1	1	23	511	533	511	533	0.95
8	13	0.00055	0.045	14.5	0.2	2	21	581	600	580	601	0.93
9	13	0.031	2.5	9.0	0.1	2	23	609	630	608	630	0.95
10	13	1.4e-07	1.2e-05	25.7	1.2	1	23	640	662	640	662	0.99
11	13	0.004	0.33	11.8	0.4	1	23	668	690	668	690	0.98
12	13	0.00035	0.029	15.1	0.7	1	23	696	718	696	718	0.98
13	13	0.00063	0.051	14.3	2.5	1	23	724	747	724	747	0.98

Sequence Information

Coding Sequence: ATGAATGCCTTAATAGAAGATTCACACGGCGAATTAATCACTATATCCATTCAAGAAACAGACACATTCCGGGAGctaaataaacgaataaaaaaagaatatggaTTACAAATGGACTTTACCAATTTACATGGCTATAGCAGTATTGATTTAGATGAGAATATTCTTGCTTCTCTGTCAAAAAATGATCAATTAGTTTCAATAAATACAGACACATCTTTTTCAAATCACACTGAAAGTGCCACAGAAGAATCTATAGATGAAGAATGCATCTTGAAAGTACAACCTCATGAAGCTAATGTGGTTGTTTATGCAAATGACATAGACATACATGCAACTTCAGAAAATGATGATGCTATTGAAATGCATAAAAGTTATCAGCTCATAACATTGGATTCAGGAATAGAACTTGATCAGCAggtgttaattaattctacaGACGAGAATGTTTTTCTTCACGCAGACGATTCGGAAATCACAGAATTAATGAGTTtaggaaataataaacgatCATACTCTAAAGATACAACACAAACAAATACTAaagtaattttagaaattactAATGATGTAGCTTCACCTTTATGTCGACTTTGTGCCAATAAAAGTGATGAaatggtatatatttttggaagaaCTGAATCAAAACAGGAAATAGcagaaaaaattgatgattgCCTTCCCATTACAGTGAGCAAGATGGATACTCTTCCAAAACAAGTGTGTCATTCATGTTTAGAGAAACTTGAGATGtgttatgaatttcataaaactgTAGTAGAAGCAGAAGCAAGTTTTGTCAAAATGGATGATGGAAAATTGATGcaaacaagaaaaacttgTCCACTTTGCAGACAAAGTACAGCTAGAATAACAACTGATCCagacaatattatttctctgGCTGATAATAATATCGCTGAACCACTTTCTTCGCTCCAATTAAAAGAAATGGAAGCAAGGCCATGTTATTGTGACAAATGTGATAAATTCATGGTATCTGAGTCATCTCTATACCATCATTTAAAAACAGTTCATTTGCAGTACAAAGAGTTTTGTTGTGACATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAATGTACAATATGCAAAAAGCGCTTCTactctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTATCAGTGCGATCAATGCGGCAAGCGATTTGACAGAACAAATACATTGACCAAGCATCTTCTGAGACACCAAGTAGAAGCAGGCAGATCAATGACATGTTACGTGTGCACAGGATGCAATGAAGTTTTTATCGATTCACTCAGTGGAAATTTGCACATTGATAACTGTATCCtgataaatgatgaaaaaaatagtataatagAAGAAAGAACTTTAACGGCCATGTACAGATGCGAGTTTTGTGAAAGATGCTATATAGATattaaatacatgaaaatgCACCGAGCTTGCCATACCGGACCGCAACCATACGTATGCACCATATGTGACATAACATACGCAACATATAATCAAGCAACAGCACACAAGTCTGCACATAAAAAATCCTCAAAGGAAGTAAACGTCAAGGAAGATGTAGTaatcccaaaatatttttcatgcgaATGCTGCAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGATATTGTGgctttgtttttgaaaatgccaaAGAGCTTTCAAGGcacaagaaaggaaaagacaaCGAGGAAACATGGCCTTGCGAGGGCTGCAATATGACATTTGGATCTATCTGCGCACTTGAAATACATAAAGAGATTCACACGAAAGCTTATGCAAATAGAAAACTCTTCAAATGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACGCAATTGACCATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGATAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAAGCCAACGCGAGAAAGGTACACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGCGAAAACACAAAAAAACTCAGCATGGAGTCCAtgaaacaatagaaaatagCAGCGGctcattgaaaattgattaa
Protein Sequence: MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFTNLHGYSSIDLDENILASLSKNDQLVSINTDTSFSNHTESATEESIDEECILKVQPHEANVVVYANDIDIHATSENDDAIEMHKSYQLITLDSGIELDQQVLINSTDENVFLHADDSEITELMSLGNNKRSYSKDTTQTNTKVILEITNDVASPLCRLCANKSDEMVYIFGRTESKQEIAEKIDDCLPITVSKMDTLPKQVCHSCLEKLEMCYEFHKTVVEAEASFVKMDDGKLMQTRKTCPLCRQSTARITTDPDNIISLADNNIAEPLSSLQLKEMEARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMTCYVCTGCNEVFIDSLSGNLHIDNCILINDEKNSIIEERTLTAMYRCEFCERCYIDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEDVVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCEGCNMTFGSICALEIHKEIHTKAYANRKLFKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETIENSSGSLKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00294715;
90% Identity: iTF_00294715;
80% Identity: -