Crja004525.1
Basic Information
- Insect
- Cephus rjabovi
- Gene Symbol
- -
- Assembly
- GCA_030264185.1
- Location
- JASCRG010000403.1:1243562-1247029[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.028 2.3 9.2 4.3 2 23 326 348 325 348 0.96 2 13 2.4e-05 0.002 18.8 2.1 1 23 354 376 354 376 0.98 3 13 0.00073 0.06 14.1 2.8 1 23 382 404 382 404 0.97 4 13 2.3e-06 0.00019 22.0 2.1 1 23 410 432 410 432 0.99 5 13 0.17 14 6.7 0.0 1 13 443 455 443 462 0.89 6 13 2.3 1.9e+02 3.1 5.0 1 20 485 504 485 507 0.94 7 13 0.0068 0.55 11.1 0.1 1 23 513 535 513 535 0.95 8 13 0.00058 0.048 14.5 0.2 2 21 583 602 582 603 0.93 9 13 0.033 2.7 9.0 0.1 2 23 611 632 610 632 0.95 10 13 1.5e-07 1.2e-05 25.7 1.2 1 23 642 664 642 664 0.99 11 13 0.0042 0.34 11.7 0.4 1 23 670 692 670 692 0.98 12 13 0.00037 0.03 15.1 0.7 1 23 698 720 698 720 0.98 13 13 0.00067 0.054 14.3 2.5 1 23 726 749 726 749 0.98
Sequence Information
- Coding Sequence
- ATGAATGCCTTAATAGAAGATTCACACGGCGAATTAATCACTATATCCATTCAAGAAACAGACACATTCCGGGAGCTAaataaacgaattaaaaaagaatatggaTTACAAATGGACTTTACCAATTTACATGGCTATAGCAGTATTGATTTAGATGAGAATATTCTTGCTTCTCTGTCAAAAAATGATCAATTAGTTTCAATAAATACAGACACATCCTTTTCAAATCACACTGAAAATGTCATAGAAGAATCTATAGATGAAGAATGCATCTTGAAAGTACAACCTGATGAAGCTAATGTGGTTGTTTATGCGAATGACATAGACATACATGCAACTTCAGAAAATGATGAAGCTATTGAAATGCATAAAAGTTATCAGCTCATAACATTGGATTCAGGAATAGAACTTGATCAGCAggtgttaattaattctacAGAAGAGAATGTTTTTCTTCACGCAGACGATTCGGAAATCACAGAATTAATGAGTTtaggaaataataaacgatCATGCTCTAAAGATACAATACAAGCAAATACTAAagtaattttagaaattacTAATGATGTGGCTTCACCTTTATGTCGACTTTGTGCCAATAAAAGTGATGAAatggtatatatttttggaacaactgaattaaaaaaggaaatagcagaaaaaattgatgattgCCTTCCCATTACAGTGAGCAAGATGGATACTCTTCCAAAACAAGTGTGTCATTCATGTTTAGAGAAACTTGAGATGTgttatgaatttcataaaactgtAGTAGAAGCAGAAGCAAGTTTTGTCAAAATGGATTATGGAAAATTGATGCAAACAAGAATGACGAGAAAAACTTGTCCACTTTGCAGACAAAGTACAGCTAGAATAAATACTGATCCAGATAATATTTCTCTGGCTGATAATAATATCGCTGAACCACTTTCTTCTCtccaattaaaagaaatggAAGCAAGGCCATGTTATTGTGACAAATGTGATAAATTCATGGTATCTGAGTCATCTCTATACCATCATTTAAAAACAGTTCATTTGCAATACAAAGAGTTTTGTTGTGACATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAATGTACAATATGCAAAAAGCGCTTCTActctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTATCAGTGCGATCAATGCGGCAAGCGATTTGACAGAACAAACACATTGACCAAGCATCTTCTGAGACACCAAGTAGAAGCAGGCAGATCAATGACATGTTACGTGTGCACAGGATGCAATGAAGTTTTTATCGATTCACTCAGTGGAAATCTGCACATTGATAACTGTATCCTgataaatgatgaaaaaaatagtataatagaagaaaaaactttAACGGCCATGTACAGATGCGAGTTTTGTGAAAGATgctatatagatattaaataCATGAAACTGCACCGAGCTTGCCATACCGGACCGCAACCATACGTATGCACCATATGCGACATAACATACGCAACATATAATCAAGCAACAGCACACAAGTCTGCACATAAAAAATCCTCAAAGGAAGTAAACATCAAGGAAGATGTAGTAAtcccaaaatatttttcatgcgAATGCTGCAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGGTATTGTGgctttgtttttgaaaatgccaAAGAGCTTTCAAGGCAcaagaaaggaaaagacaaCGAGGAAACATGGCCTTGCGAGGGCTGCAATATGACATTTGGATCTATCTGTGCACTTGAAATACATAAAGAGATTCACACGAAAGcttatgcaaataaaaaactcTTCAAATGTCTGTACTGTGGAAAAGAGTTTGTTCAGAAAACGCAATTGACCATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGATAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAGGCCAACGCGAGAAAGGTACACATGACCATTCATACGGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGCGAAAACACAAAAAAACTCAGCATGGAGTGCAtgaaacaatagaaaatagCAGCggcttattgaaaattgattaa
- Protein Sequence
- MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFTNLHGYSSIDLDENILASLSKNDQLVSINTDTSFSNHTENVIEESIDEECILKVQPDEANVVVYANDIDIHATSENDEAIEMHKSYQLITLDSGIELDQQVLINSTEENVFLHADDSEITELMSLGNNKRSCSKDTIQANTKVILEITNDVASPLCRLCANKSDEMVYIFGTTELKKEIAEKIDDCLPITVSKMDTLPKQVCHSCLEKLEMCYEFHKTVVEAEASFVKMDYGKLMQTRMTRKTCPLCRQSTARINTDPDNISLADNNIAEPLSSLQLKEMEARPCYCDKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMTCYVCTGCNEVFIDSLSGNLHIDNCILINDEKNSIIEEKTLTAMYRCEFCERCYIDIKYMKLHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNIKEDVVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCEGCNMTFGSICALEIHKEIHTKAYANKKLFKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETIENSSGLLKID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294715;
- 90% Identity
- iTF_00294715;
- 80% Identity
- -