Pxan003888.1
Basic Information
- Insect
- Phylloecus xanthostoma
- Gene Symbol
- -
- Assembly
- GCA_030142555.1
- Location
- JARQTF010000256.1:1046219-1049705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0034 0.23 12.0 1.8 1 23 263 285 263 285 0.94 2 15 0.025 1.7 9.3 4.3 2 23 293 315 292 315 0.96 3 15 2.3e-05 0.0016 18.8 2.1 1 23 321 343 321 343 0.98 4 15 0.0007 0.047 14.2 2.8 1 23 349 371 349 371 0.97 5 15 2.2e-06 0.00015 22.0 2.1 1 23 377 399 377 399 0.99 6 15 0.41 28 5.4 0.0 1 12 410 421 410 429 0.90 7 15 5.5 3.7e+02 1.9 5.7 1 20 452 471 452 474 0.92 8 15 0.012 0.79 10.3 0.1 1 23 480 502 480 502 0.94 9 15 0.0021 0.14 12.7 0.2 2 21 550 569 549 570 0.93 10 15 0.02 1.3 9.6 0.1 2 23 578 599 577 599 0.95 11 15 4.7e-07 3.2e-05 24.1 1.2 1 23 609 631 609 631 0.99 12 15 0.004 0.27 11.8 0.4 1 23 637 659 637 659 0.98 13 15 2.5e-05 0.0017 18.7 1.1 1 23 665 687 665 687 0.98 14 15 0.00036 0.024 15.1 0.7 1 23 693 715 693 715 0.98 15 15 0.00067 0.045 14.2 1.8 1 23 721 744 721 744 0.98
Sequence Information
- Coding Sequence
- atgaatgccTTAATAGAAGATTCACATGGCGAGTTAATCACTATATCCATTCAGCAAACAGATACGTTCCGGGAGCTgaataaacgaataaagaaagaatatggtttacaaatggactttaccaATTTACATGgctataataatatcgatttaGATGAAAACATTCTTGCTTCTCTATCGAAAAATGATCAGTTAGTTTCAATAAATACAGATACATCCCTTTCGAATCATACTGAAAGTGCGATAGAAGAATCTGCAGATGAAGAATGCATCTTAAATGTACAATCTAACGAGGCTAATGTGGTTGTTTATGCAAATGACATAGacataaatagaaattcagaAAGTGATGAAGCTATTGAAATACACAAGAGTTATCAGCTCATAACTTTGGATCCAGGAATGGAACTTGACCAGcaggtattaattaattccacaGAGGAGAATGCTTTTTTTCGCACGGACGATTCGGAAATCACTGAATTAATGAACCCAGCAAACGATAAACGTCCTTACTCGAAAGATGCAATAGAAGCAgatacaaaagtaattttagaaattacGAATGACGTGGCTTCACCTCTATGTCGACTTTGTGCCAATAGAAGTAACGaaatggtatatatttttggaacgACTGAATCAAAGAAGGAAATAGCagaaaaaattgatgattGCCTTCCCATTGCAGTAAGCAAGATAGATACTCTTCCGAAACAAGAAGACTACAACGAGCACAGCGTAGAACACACTGAAGGTAAAAAGTGCGAGCGAAGATCTGCAACACATGCATGTAACGAATGTGGCAAGAAATTTGTTAGCGAGGAAAGACTTCAGTTTCATATGAACTTCCACGAACCAGGAGCAAGACCATGTTATTGTGAGAAATGTGATAAATTCATGGTATCCGAGTCATCTCTGTATCATCATTTGAAGACAGTTCATTTACAGTACAAAGAGTTTTGTTGCGACATCTGTGGTAAGCAGTTCAGAGCACAAGCACAATTGGACTCTCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAATGTACAATATGCAAAAAGCGCTTCTATTCCAATGAAATCTTAAAAAGGCACAAGAAGCTACATCTTCCCGATAAACCTTATCAGTGTGATCAATGCGGCAAGAGATTTGACAGAACAAATACGTTGACCAAGCATCTTCTGAGACATCAAGTAGAAGCAGGCAAATCAATGATATGTTACGTGTGTACAGGATGTAAGGAAGTTTTTATCGATTTACTCAGTGGGAATTTGCACATTGATAACTGTATTCTAACGAATGATGGAATGGATATtagaatagaagaaagaaatttaacaGGCATTTACAGATGCGAATTTTGTGAAAGATGCTACACAGAAATCAAATACATGAAAATGCACCGAGCTTGCCATACCGGGCCCCAACCGTATATATGTACCATATGTGACATCACATATGCGACATATAATCAAGCAACAGCACACAAGTCTGCACACAAAAAATCCTCAAAAGAAGTAAACGTCAAGGAGGACATAGtgattccaaaatatttttcatgcgaATGCTGCAATAAGGAATTCCTCCACTTTACCAATATGAATATCCACAGAAAAGCATGTGCAAGTGGTAAAAACTGGACTTGCCGTTATTGTGGCtctgtttttgaaaatgctAAGGAGCTTTCAAGACACAAAAAAGGGAAAGACAATGAGGAAACATGGCCTTGCGAAGGTTGCGACATGACATTTGGATCTGTCTGTGCACTTGAAATACATAAAGAGATCCATACTAAAGCTTATGCAaatagaaaactttttaaGTGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACACAATTGACCATTCATGTAAGAAGCCATACCGGTGAGAGACCTTATGCTTGTGACTTATGTGATAAGGCGTACAAAATCAAAGCTGAAAGGGACAATCATCGTAGAACTCATACGGGTGAACGTCCTTTTAAGTGCACACTATGTGAGAAAGCTTTCACTAATCCTGCTAGACTTCGAGAGCATACAAGATTTCATTCAGGCATACGACCCTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAGGCTAACGCAAGAAAGGTACACATGACCATTCACACCGGAGAGAAACCTTATCAATGTGATGTGTGtagtatatattttagaaGAATGGGGGATATGCGAAAGCACAAAAAGACTCAGCATGGAATACAAGAAACAATAGAAAGTAGCAGCGGTtcgttgaaaattcattga
- Protein Sequence
- MNALIEDSHGELITISIQQTDTFRELNKRIKKEYGLQMDFTNLHGYNNIDLDENILASLSKNDQLVSINTDTSLSNHTESAIEESADEECILNVQSNEANVVVYANDIDINRNSESDEAIEIHKSYQLITLDPGMELDQQVLINSTEENAFFRTDDSEITELMNPANDKRPYSKDAIEADTKVILEITNDVASPLCRLCANRSNEMVYIFGTTESKKEIAEKIDDCLPIAVSKIDTLPKQEDYNEHSVEHTEGKKCERRSATHACNECGKKFVSEERLQFHMNFHEPGARPCYCEKCDKFMVSESSLYHHLKTVHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGKSMICYVCTGCKEVFIDLLSGNLHIDNCILTNDGMDIRIEERNLTGIYRCEFCERCYTEIKYMKMHRACHTGPQPYICTICDITYATYNQATAHKSAHKKSSKEVNVKEDIVIPKYFSCECCNKEFLHFTNMNIHRKACASGKNWTCRYCGSVFENAKELSRHKKGKDNEETWPCEGCDMTFGSVCALEIHKEIHTKAYANRKLFKCLYCGKEFVQKTQLTIHVRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGERPFKCTLCEKAFTNPARLREHTRFHSGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSIYFRRMGDMRKHKKTQHGIQETIESSSGSLKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294715;
- 90% Identity
- iTF_01198858; iTF_01131020; iTF_00770554;
- 80% Identity
- -