Cpyg004436.1
Basic Information
- Insect
- Cephus pygmeus
- Gene Symbol
- -
- Assembly
- GCA_036026175.1
- Location
- JAYRBY010000404.1:1232615-1236073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2e-05 0.0021 18.9 2.1 1 23 293 315 293 315 0.98 2 12 0.00067 0.063 14.3 2.8 1 23 321 343 321 343 0.97 3 12 2.1e-06 0.0002 22.1 2.1 1 23 349 371 349 371 0.99 4 12 0.16 15 6.8 0.0 1 13 382 394 382 401 0.89 5 12 2 1.9e+02 3.4 5.0 1 20 424 443 424 446 0.94 6 12 0.0062 0.59 11.2 0.1 1 23 452 474 452 474 0.95 7 12 0.00053 0.051 14.6 0.2 2 21 522 541 521 542 0.93 8 12 0.03 2.8 9.1 0.1 2 23 550 571 549 571 0.95 9 12 1.4e-07 1.3e-05 25.9 1.2 1 23 581 603 581 603 0.99 10 12 0.0039 0.37 11.9 0.4 1 23 609 631 609 631 0.98 11 12 0.00034 0.032 15.2 0.7 1 23 637 659 637 659 0.98 12 12 0.00061 0.058 14.4 2.5 1 23 665 688 665 688 0.98
Sequence Information
- Coding Sequence
- ATGAACGCCTTAATAGAAGATTCACACGGCGAATTAATCACTATATCCATTCAAGAAACAGACACATTCCGGGAGCtaaataaacgaataaaaaaagaatatggaTTACAAATGGACTTTACCAATTTACATGGCTATAGCAGTATTGATTTAGACGAGAATATTCTTGCTTCTCTGGCAAAAAATGATCAATTAGTTTCAATAAATACAGACACATCCTTTTCAAATCACACTGAAAGTGTCATAGAAGAATCTATAGATGAAGAATGCATCTTGAAAGTACAACCTGATGAAGCTAATGTGGTTGTTTATACGAATGACATAGACATATGTGCAACTTCAGAAAATGATGCTATTGAAATGCATAAAAGTTATCAGCTCATAACATTGGATTCAGGAATAGAACTTGATCAGCAGGTGTTAATTAATTCTACAGACGAGAATGTTTTTCTTCACGCAGACGATTCGGAAATCACAGAATTAATGAGTTtaggaaataataaacgaGCATACTCTAAAGATACAACACAAACAAATACTAaagtaattttagaaattactAATGATGTGGCTTCACCTTTATGTCGACTTTGTGCCAATAAAAGTGATGAaatggtatatatttttggaagaaCTGAatcaaaaaaggaaatagcagaaaaaattgatgattgCCTTCCCATTACAGTGAGCAAGATGGATACTCTTCCAAAACAAGTGTGTCATTCATGTTTAGAGAAACTTGAGATGTgttatgaatttcataaaactgTAGTAGAAGCAGAAGCAAGTTTTGTCAAAATGGATTATGGAAAATTGAtgcaaacaagaaaaacttgTCCACTTTGCAGACAAATTCATTTGCAGTACAAAGAGTTTTGTTGTGACATCTGTGGCAAGCAGTTCAGAGCACAAGCACAATTGGACTCCCATCAAAGAAAGCACAAAGATGAGCGACCGTTCGAATGTACAATATGCAAAAAGCGCTTCTActctaatgaaattttgaaaaggcaCAAAAAGTTACATCTTCCTGATAAACCTTATCAGTGCGATCAATGCGGCAAGCGATTTGACAGAACAAATACATTGACCAAGCATCTTCTGAGACACCAAGTAGAAGCAGGCAGATCAATGACATGTTACGTGTGCACAGGATGCAATGAAGTTTTTATCGATTCACTCAGTGGAAATTTGCACATTGATAACTGTATCCtgataaatgatgaaaaaaatagtataatagAAGAAAGAACTTTAACGGCCATGTACAGATGCGAATTTTGTGAAAGATGCTATATAGATattaaatacatgaaaatgcACCGAGCTTGCCATACTGGACCGCAACCATACGTATGCACCATATGCGACATAACATACGCAACATATAATCAAGCAACAGCACACAAGTCTGCACataaaaaatcctcaaagGAAGTAAACGTCAAGGAAGATGTAGTAatcccaaaatatttttcatgcgaATGCTGCAATAAGCAATTCCTTCACTTCACCAATATGAATATCCACAGAAAAGCGTGTGCCAGTGGTAAAAACTGGACTTGTCGATATTGTGgctttgtttttgaaaatgccaAAGAGCTTTCAAGGCacaagaaaggaaaagacaaCGAGGAAACATGGCCTTGCGAGGGCTGCAATATGACATTTGGATCTATCTGCGCACTTGAAATACATAAAGAGATTCACACGAAAGCTTATGCAAATAGAAAACTCTTCAAATGTCTCTACTGTGGAAAAGAGTTTGTTCAGAAAACGCAATTGACAATTCATATAAGAAGCCATACTGGTGAAAGACCTTATGCTTGTGACTTGTGTGACAAGGCGTATAAAATCAAAGCTGAACGGGATAATCATCGTAGAACTCATACAGGCATACGACCTTATAAATGTAATCTTTGTGAACGCGCCTTTAAAAAAGCCAACGCGAGAAAGGTACACATGACCATTCATACTGGAGAGAAACCTTATCAATGTGATGTGTGTAGTACATATTTTAGAAGAATGGGTGATATGCGAAAACACAAAAAGACTCAGCATGGAGTGCAtgaaacaatagaaaatagCAGCGGctcattgaaaattgattaa
- Protein Sequence
- MNALIEDSHGELITISIQETDTFRELNKRIKKEYGLQMDFTNLHGYSSIDLDENILASLAKNDQLVSINTDTSFSNHTESVIEESIDEECILKVQPDEANVVVYTNDIDICATSENDAIEMHKSYQLITLDSGIELDQQVLINSTDENVFLHADDSEITELMSLGNNKRAYSKDTTQTNTKVILEITNDVASPLCRLCANKSDEMVYIFGRTESKKEIAEKIDDCLPITVSKMDTLPKQVCHSCLEKLEMCYEFHKTVVEAEASFVKMDYGKLMQTRKTCPLCRQIHLQYKEFCCDICGKQFRAQAQLDSHQRKHKDERPFECTICKKRFYSNEILKRHKKLHLPDKPYQCDQCGKRFDRTNTLTKHLLRHQVEAGRSMTCYVCTGCNEVFIDSLSGNLHIDNCILINDEKNSIIEERTLTAMYRCEFCERCYIDIKYMKMHRACHTGPQPYVCTICDITYATYNQATAHKSAHKKSSKEVNVKEDVVIPKYFSCECCNKQFLHFTNMNIHRKACASGKNWTCRYCGFVFENAKELSRHKKGKDNEETWPCEGCNMTFGSICALEIHKEIHTKAYANRKLFKCLYCGKEFVQKTQLTIHIRSHTGERPYACDLCDKAYKIKAERDNHRRTHTGIRPYKCNLCERAFKKANARKVHMTIHTGEKPYQCDVCSTYFRRMGDMRKHKKTQHGVHETIENSSGSLKID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294715;
- 90% Identity
- iTF_00294715;
- 80% Identity
- -