Chis011455.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- -
- Assembly
- GCA_004195275.1
- Location
- SGAY01003208.1:5290-10426[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-12 1.6e-08 34.9 0.0 1 39 309 348 309 352 0.90 2 4 1.7e-12 5.7e-09 36.3 0.1 2 39 364 401 363 404 0.94 3 4 3.8e-19 1.3e-15 57.5 0.0 1 45 418 463 418 463 0.97 4 4 7e-19 2.4e-15 56.7 0.1 1 42 470 512 470 513 0.97
Sequence Information
- Coding Sequence
- ATGCCGGGAGACGACAAGCTCGCGCGAGAAATATGCAAATCCAATCGGACCGGACCCCCGCGTGGTCTTTCGTCCGCTTCTCACAAAGCGTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCCTCAGTTCGCCGCCGAGGGAATCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCACCATCAACGGTACAAGCGACCCAGAATCGAGCGGCCCACGTTCGAGCCGCGCGCAACCGATCCAAGACACTACGAGCGTTACAAAGAGGAAGAGGCGATTACAATCAACGATTATAGCCTCGATAACAAAGAGAATCACCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCCAAcgtaacaacaacaacaacaacggTAACGGCGCGAGTAACAACAACAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCATCATCCTGATCCCGGGGAGGTCGATTTACCCCCCGAAACCCAACCCACTCCACCCAGCGCCACCTTGGTCGGCACTACCATCACTCATCTAAGGGATCCGGATCATCATTCTACAGAGATTCAGAACTGCGATAGCGAGATTAAGATCAAATTCGAAACATTGCACACGATGGACTCTTCGGACACGATCGACATAGACAGCCACATGTCAGATCGGGCTAGCGTGAGCTCGAAAAATGCCGCCGACAGTGACAACATGATGATGATAACACCAGAGCTACTTGGACTGATGCCATCGGGAAGCTCCGGCCAGTCGGACTCAGGCGACAACAATTCGAGGGGGCATTCTGGACAGTCCAGCTCGCATCATCACGGCTCGAAATCGTGGACGCAGGAGGACATGGACGCCGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGGcAACGTTTAATATTCCCTCGACGACTCTGTGGCAACGGGCGCATCGACTGGGTATCGACACGCCCAAAAAGGATGGTCCCACGAAATCTTGGAGCGACGAAAGCTTAAACAATGCTTTAGAAGCTTTACGTACCGGCACCATTTCGGCTAATAAAGCATCTAAGGCATTCGGCATACCTTCTAGCACATTGTATAAGATCGCGAGGAGGGAAGGCATCAGGCTGGCCGCACCGTTCAATGCAAGTCCCACGACGTGGACGCCTGCCGATCTGGATCGCGCTTTAGAAGCGATAAGATCTGGTCAAACGTCCGTTCAGAGAGCGTCGACAGAATTCGGCATACCCACGGGGACATTGTATGGAAGATGTAAGCGTGAAGGAATCGAACTTAGTAGGAGCAATCCCACGCCATGGAGCGAGGATGCCATGACTGAAGCTCTCGAGGCTGTCAGATTAGGGCACATGAGCATCAATCAAGCAGCAATCCATTATAATCTGCCGTATTCGTCATTGTACGGGCGTTTCAAGAGAGGCAAATACGAAGAACCCGTCGTCGGCGACATCTCGCAGGATGGCAGCAGTCCACATTTTCATCAGAGTCCCAATCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MPGDDKLAREICKSNRTGPPRGLSSASHKASLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRATDPRHYERYKEEEAITINDYSLDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFNIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00109740; iTF_00729209; iTF_01423553; iTF_01498110; iTF_00867307; iTF_01520139; iTF_01520386; iTF_00182543; iTF_01422831; iTF_01015954; iTF_01015714; iTF_01421460; iTF_01408981; iTF_00868026; iTF_00868680; iTF_00884987; iTF_00884988; iTF_01422142;
- 90% Identity
- iTF_01520386;
- 80% Identity
- -