Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000006.1:1386093-1391126[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.5e-12 2.5e-09 38.1 0.0 1 39 341 380 341 384 0.90

2 4 1.6e-12 1.6e-09 38.7 0.1 2 39 396 433 395 436 0.94

3 4 2.3e-18 2.3e-15 57.4 0.0 1 45 450 495 450 495 0.97

4 4 4.1e-18 4.1e-15 56.6 0.1 1 42 502 544 502 545 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.5e-12	2.5e-09	38.1	0.0	1	39	341	380	341	384	0.90
2	4	1.6e-12	1.6e-09	38.7	0.1	2	39	396	433	395	436	0.94
3	4	2.3e-18	2.3e-15	57.4	0.0	1	45	450	495	450	495	0.97
4	4	4.1e-18	4.1e-15	56.6	0.1	1	42	502	544	502	545	0.97

Sequence Information

Coding Sequence: ATGAAGCGTCTCCTCGACAACAGTCTTTCGGAGATGCGAATTTCGTCGTTGAGAAGCGCCAGAATCGGTGGACGAGGCACGTCCCGACGCGGATTGTCGTCGTTCGGCAACACTCGCCGAAACTGGATCGCCGGCGCGCCTGATTTTCAGGAGCGACGAGCGACGTTTGAGTGCTTACCGTTTCTTCCACAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGAGACGGTCCGCCACCCGTGAGCCTGAGCTCGCCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGCGGTACAAGAGACCCAGAATCGAGCGGCCCACGTTCGAGCAGCGCGCCACCGATTCGAGACATTACGATCGCTACAAAGAGGAGGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCCAGCGtagtaataataacaataacaacaaCAACGGTAACGGCACGAGTAACAACGGTGACATGTTCTGTCACACAGGGCTAGGGCACTACGGCCACCATCCGGATCCTGGAGAGGTCGATTTGCCCCCTGAGACCCAACCCACTCCACCCAGCGCCACCCTGGTCGGCACCACCATCACCCACCTAAGGGATCCGGATCATCATTCTACAGAGATTCAGAACTGCGACAGCGTCAAGATCAAGTTCGAGACGCTGCACACAATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGTTGTTGGGACTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCGGGCGAGAACAATTCGAGGGGACACAGCGGACAGTCCAGCTCGCATCATCACGGTTCAAAATCGTGGACGCAAGAGGACATGGACGCGGCTTTAGAGGCGCTGAGAAATCACAACATGAGCCTGACGAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTGTGGCAACGGGCACATCGATTGGGCATCGACACGCCGAAGAAAGACGGCCCCACGAAATCCTGGAGCGACGAGAGCTTGAACAACGCTTTAGAAGCGTTGCGCACCGGTTCCATTTCGGCTAACAAGGCGTCAAAGGCGTACGGCATACCTTCCAGTACGTTGTACAAGATCGCCAGGAGAGAAGGTATCAGACTGGCCGCGCCGTTCAACGCGAGTCCCACTACGTGGACGCCCGCCGATCTGGACCGCGCCCTAGAAGCAATAAGATCTGGTCAGACCTCCGTGCAGAGAGCGTCGACAGAATTCGGTATACCTACGGGGACTTTGTATGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTTAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCACTACAATCTGCCGTATTCGTCACTGTACGGGCGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACATCTCGCAGGATGGCACCAGCCCGCATTTCCATCAGAGCCCCAACCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
Protein Sequence: MKRLLDNSLSEMRISSLRSARIGGRGTSRRGLSSFGNTRRNWIAGAPDFQERRATFECLPFLPQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEQRATDSRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRSNNNNNNNNGNGTSNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00279879;
90% Identity: iTF_01520386;
80% Identity: -