Timm000237.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- -
- Assembly
- GCA_011636585.1
- Location
- VBVO01000336.1:72186-79058[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.4e-13 1.5e-09 38.0 0.0 1 39 359 398 359 402 0.90 2 4 4e-13 8.9e-10 38.7 0.1 2 39 414 451 413 454 0.94 3 4 5.7e-19 1.3e-15 57.4 0.0 1 45 468 513 468 513 0.97 4 4 1e-18 2.4e-15 56.6 0.1 1 42 520 562 520 563 0.97
Sequence Information
- Coding Sequence
- ATGCCGTCGCGTACACCGAGAGAAACGAGATCGCTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAAAACAGAGACGGTCCGCCTCCCGTGAGCCTGAGCTCACCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGCGGTACAAGAGACCCAGAATCGAACGGCCTACGTTCGAGTCGCGCACCACCGATCCGAGACATTACGATCGCTACAAAGAGGAGGAGGCCAACGATTACAGCCGTGATAACAAAGAGAATCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGccaacgtaataataataataacaacaataacaaCAACGGTAACGGCACGAGTAACAACGGTGACATGTTCTGTCACACAGGGCTAGGGCACTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACTCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACTACCATCACCCACCTGAGGGATCCGGATCATCATACAGCAGCAGCCCACGCAACCTCATTTAGCGTCCTTCCGCGTCCAGTCTCGCCTTCGACAGTGCTCGCTTATCGATCCTCAGGTACCATCGAGGCTTACCGAGTAACTTCCGCAAGTCCCTCGGCGAAGATATATACCGTCGCGAAAGTTATGTCGAGTTACCCCGACGCGAAGCGCCAACAGCAGCGGCGTGTCATGCCCGTTTCCCGCGATCTGTTCGCAGAGATTCAGACTTGCGACAGCGTCAAGATCAAATTCGAGACACTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCAGATCGGGCGAGCGTAAGCTCGAAGAATGCAGGTGACAGTGACAACATGATGATGATAACACCAGAGTTGCTGGGACTGATGCCATCGGGAAGCTCTGGCCAGTCGGACTCGGGCGAGAACAATTCGAGGGGGCACAGCGGACAATCCAGCTCGCATCATCACGGGTCAAAATCGTGGACGCAAGAGGACATGGACGCGGCTTTAGAGGCACTGAGAAATCACAACATGAGCTTGACGAAAGCTTCGGCAACATTCGGTATCCCTTCGACAACTTTGTGGCAACGGGCACATCGATTGGGTATCGACACGCCGAAGAAAGACGGTCCCACGAAATCCTGGAGCGACGAGAGCTTGAACAACGCTTTAGAAGCGTTACGCACCGGTTCGATTTCGGCTAATAAGGCATCCAAGGCGTACGGCATACCTTCCAGTACATTGTACAAGATCGCCAGGAGAGAAGGCATCAGACTGGCCGCGCCATTCAACGCGAGTCCCACTACATGGACACCCGCCGATCTGGATCGCGCCCTAGAAGCAATAAGATCTGGTCAAACCTCCGTGCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGAACTTTGTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGTGAAGACGCTATGACTGAAGCTCTTGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCACTACAATCTGCCGTATTCGTCACTGTACGGGCGCTTCAAGAGAGGCAAATACGAGGAGCCCGTCGTCGGCGACATCTCGCAGGATGGTACCAGTCCGCATTTCCATCAGAGTCCCAACCAGAATCATTCGTCCGCCCTTCCAGATCAAATGCCTTACCCGGGCAGCTGA
- Protein Sequence
- MPSRTPRETRSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFESRTTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNNGNGTSNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTAAAHATSFSVLPRPVSPSTVLAYRSSGTIEAYRVTSASPSAKIYTVAKVMSSYPDAKRQQQRRVMPVSRDLFAEIQTCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAGDSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279879;
- 90% Identity
- -
- 80% Identity
- -