Basic Information

Insect: Formica aserva
Gene Symbol: -
Assembly: GCA_037039905.1
Location: JAXRKO010000008.1:1998996-2004157[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.4e-12 2.7e-08 34.9 0.0 1 39 307 346 307 350 0.90

2 4 3.4e-12 9.6e-09 36.3 0.1 2 39 362 399 361 402 0.94

3 4 7.7e-19 2.2e-15 57.5 0.0 1 45 416 461 416 461 0.97

4 4 1.4e-18 4e-15 56.7 0.1 1 42 468 510 468 511 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.4e-12	2.7e-08	34.9	0.0	1	39	307	346	307	350	0.90
2	4	3.4e-12	9.6e-09	36.3	0.1	2	39	362	399	361	402	0.94
3	4	7.7e-19	2.2e-15	57.5	0.0	1	45	416	461	416	461	0.97
4	4	1.4e-18	4e-15	56.7	0.1	1	42	468	510	468	511	0.97

Sequence Information

Coding Sequence: ATGCCGGGAACGACGAGTTCGCGCGAGAAATATGCAAATCCAATCGGACCGGACCCGCGTGGTCCTTCGTCCGCCTCTCGCAAAGCGTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCCTCAGCTCGCCGCCGAGGGAATCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCATCATCAACGGTACAAGCGACCCAGAATCGAACGGCCCACGTTCGAGCCGCGCGCTACCGATCCAAGACATTACGAGCGCTACAAAGAGGAAGAGGCGATTACAATCAACGATTATAGCCGCGATAACAAAGAGAACCATCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCACTGGAAACTTGCCAACGTaataacaacaacaacaacggTAACGGCGCGAGTAACAACAACAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCACCATCCTGATCCCGGGGAAGTCGATTTACCCCCCGAAACCCAACCCACTCCACCCAGCGCCACATTGGTCGGCACTACCATCACCCATCTAAGGGATCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGAGATCAAGATCAAGTTCGAGACGTTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCAGATCGGGCTAGCGTGAGCTCGAAAAATGCCGCCGACAGCGACAACATGATGATGATAACCCCAGAGCTGCTTGGACTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCAGGCGACAACAATTCGAGGGGGCATTCTGGACAGTCCAGCTCGCATCATCACGGTTCGAAATCGTGGACGCAGGAGGACATGGACGCGGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGGCAACGTTCAATATTCCCTCGACGACTCTGTGGCAACGAGCGCATCGACTGGGCATCGACACGCCCAAGAAGGATGGTCCCACGAAATCCTGGAGCGACGAAAGCTTAAACAACGCTTTAGAAGCTTTACGTACTGGCACTATTTCGGCTAATAAAGCGTCCAAGGCATTCGGCATACCTTCTAGCACATTGTATAAGATCGCGAGGAGGGAAGGCATCAGGCTGGCTGCACCGTTCAATGCAAGTCCCACGACGTGGACGCCCGCCGATCTGGATCGCGCTTTGGAAGCGATAAGATCTGGCCAAACGTCCGTTCAGAGAGCGTCGACAGAATTCGGCATACCCACGGGGACATTGTATGGAAGATGTAAGCGGGAAGGAATCGAACTTAGCAGGAGCAATCCCACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCTGTCAGATTAGGGCACATGAGCATCAATCAAGCAGCGATCCATTACAATCTGCCGTATTCGTCATTGTACGGGCGTTTCAAGAGAGGCAAATACGAAGAACCCGTCGTCGGCGACATTTCGCAGGATGGCAGCAGTCCACACTTTCATCAGAGTCCCAATCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
Protein Sequence: MPGTTSSREKYANPIGPDPRGPSSASRKASLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRATDPRHYERYKEEEAITINDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFNIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00279879;
90% Identity: iTF_01520386;
80% Identity: iTF_01245134;