Atex007291.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- -
- Assembly
- GCA_004480015.1
- Location
- QEPB01040497.1:1-6748[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-13 1.1e-09 38.3 0.0 1 39 276 315 276 319 0.90 2 4 2.2e-13 7e-10 39.0 0.1 2 39 331 368 330 371 0.94 3 4 8.3e-19 2.7e-15 56.3 0.0 1 45 385 430 385 430 0.96 4 4 5.7e-19 1.9e-15 56.8 0.1 1 42 437 479 437 480 0.97
Sequence Information
- Coding Sequence
- TCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGTCTGAGTTCGCCGCCGAGAGAGTCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCACCATCAGAGATACAAGAGACCCAGAATCGAGCGGCCCACATTCGAGCCGCGTCCTACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCTAACGATTACAGCCGTGACAATAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCATTGGAAACTTGCcaacgtaataataataacaataacaacaacaacgGTAACGGCACGAGTAACAACAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACCCCACCCAGCGCCACCCTGGTTGGCACTACTATCACCCACTTGAGGGATCCGGATCATCATTCTACagAGATTCAGAATTGCGACAGCGTCAAGATCAAGTTCGAAACGCTGCACACGATGGACTCCTCGGACACGATTGACATAGATAGCCATATGTCGGATCGGGCGAGCGTAAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGTTGTTGGGACTGATGCCATCAGGAAGCTCTGGTCAGTCAGACTCTGGTGAGAATAACTCGAGGGGGCACAGTGGACAGTCCAGCTCGCACCATCACGGTTCAAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACAAAAGCTTCAGcaacattCGGTATTCCCTCAACGACACTATGGCAACGGGCGCATCGATTGGGCATCGACACACCGAAGAAAGACGGCCCCACGAAATCCTGGAGCGACGAGAGTTTGAACAATGCCTTAGAAGCGTTGCGTACCGGTTCCATTTCGGCTAACAAAGCGTCCAAAGCATATGGCATACCTTCTAGCACGTTGTATAAAATCGCCAGGAGGGAAGGTATCAGATTGGCCGCACCGTTCAACGCGAGTCCCACTACCTGGACACCCTCCGATTTGGATCGCGCTTTAGAAGCAATAAGATCTGGTCAGACGTCCGTACAGAGAGCGTCAACGGAATTCGGTATACCTACGGGGACTCTTTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGTAGAAGCAATCCTACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATAAATCAAGCAGCAATCCATTATAATTTGCCGTATTCGTCACTATACGGACGCTTTAAGAGGGGCAAATACGAGGAACCTGTCGTCGGTGATATCTCGCAAGATGGTACCAGTCCACATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGTTGA
- Protein Sequence
- SLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPSDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279879;
- 90% Identity
- iTF_01520386;
- 80% Identity
- iTF_00015472;