Lace038175.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000898.1:24853-29021[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-12 2.3e-09 38.2 0.0 1 39 302 341 302 345 0.90 2 4 1.4e-12 1.4e-09 38.9 0.1 2 39 357 394 356 397 0.94 3 4 2.1e-18 2.1e-15 57.6 0.0 1 45 411 456 411 456 0.97 4 4 3.7e-18 3.8e-15 56.7 0.1 1 42 463 505 463 506 0.97
Sequence Information
- Coding Sequence
- ATGCGCGACTCGTTACTTCTGAAGTTACACGTCTGGCTTTTGGCGACTACAGAGTGCTTTACGTTTCTTCCACAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGAGACGGTCCGCCACCCGTGAGCCTGAGCTCGCCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGCGGTACAAGAGACCCAGAATCGAGCGGCCCACGTTCGAGCAGCGCGCCACCGATTCGAGACATTACGATCGCTACAAAGAGGAGGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCCAGCGtagtaataataacaataacaacaaCAACGGTAACGGCACGAGTAACAACGGTGACATGTTCTGTCACACAGGGCTAGGGCACTACGGCCACCATCCGGATCCTGGAGAGGTCGATTTGCCCCCTGAGACCCAACCCACTCCACCCAGCGCCACCCTGGTCGGCACCACCATCACCCACCTAAGGGATCCGGATCATCATTCTACAGAGATTCAGAACTGCGACAGCGTCAAGATCAAGTTCGAGACGCTGCACACAATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAATTGTTGGGACTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCGGGCGAGAACAATTCGAGGGGACACAGCGGACAGTCCAGCTCGCATCATCACGGTTCAAAATCGTGGACGCAAGAGGACATGGACGCGGCTTTAGAGGCGCTGAGAAATCACAACATGAGCCTGACGAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTGTGGCAACGGGCACATCGATTGGGTATCGACACGCCGAAGAAAGACGGCCCCACGAAATCCTGGAGCGATGAGAGCTTGAACAACGCTTTAGAAGCGTTGCGCACCGGTTCCATTTCGGCTAACAAGGCGTCAAAGGCGTACGGCATACCTTCCAGTACGTTGTACAAGATCGCCAGGAGAGAAGGTATCAGACTGGCCGCGCCGTTCAACGCGAGTCCCACTACGTGGACGCCCGCCGATCTGGACCGCGCCCTAGAAGCAATAAGATCTGGTCAGACCTCCGTGCAGAGAGCGTCGACAGAATTCGGTATACCTACGGGGACTTTGTATGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTTAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCACTACAATCTGCCGTATTCGTCACTGTACGGGCGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACATCTCGCAGGATGGCACCAGCCCGCATTTCCATCAGAGCCCCAACCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MRDSLLLKLHVWLLATTECFTFLPQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEQRATDSRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRSNNNNNNNNGNGTSNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279879;
- 90% Identity
- iTF_01520386;
- 80% Identity
- -