Lful014317.1
Basic Information
- Insect
- Lasius fuliginosus
- Gene Symbol
- -
- Assembly
- GCA_949152495.1
- Location
- OX424446.1:13207961-13216836[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-12 6.4e-09 36.5 0.0 1 39 417 456 417 460 0.90 2 4 4.2e-12 9.4e-09 36.0 0.1 2 39 472 509 471 512 0.94 3 4 9.7e-19 2.2e-15 57.2 0.0 1 45 526 571 526 571 0.97 4 4 1.8e-18 3.9e-15 56.4 0.1 1 42 578 620 578 621 0.97
Sequence Information
- Coding Sequence
- ATGCATCCACCTCCGAACCGACCAACCAACCAACCACCCGccccgccgccgtcgccgtcgccgtcgccgtcgcctaACCCCCGCAGCGAACCCCCCTTTTACTCCCCCTCCGTCCGTGGTTCTCCAAGTGCCGTCGCCGTTAAAGCACCGCGTGTCGGCAAAGAAACCTCGAAGAACCGAAGAACGAGTTGCGTGTCGGGCGAAACGTTCGCCGAAATACTCGACTGGATCTCGCCGGCGTTGATTTTCAGAAGCGATGTGGATTTCGTGGGTGGACGGACAATAATGCTAGCCGCCGCTTCCTCCGCCGTCGAGATGAAATTGCACCGCCGCCGGGCGAAACGAGATGCCGGGGACGACGAGCTCGCGCGAGAAATATGCAAATCCAATCGGACCGGACCCGCGTGGTCCTTCTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGCGCCGGAGAACAGAGACGGTCCGCCACCCGTGAGCCTGAGCTCGCCGCCGAGGGAGTCCAGCACCCCGAGATTGAACTATACGAAGCTGAAGAAGCACCATCAACGGTACAAACGACCCAGAATCGAGCGGCCCACGTTCGAGCCGCGCGCCACCGATCTGAGGCACTACGAGCGCTACAAAGAGGGAGAGGCGATTACGACCAACGATTATAGCCGCGATAATAAAGAGAACCACCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCATTGGAAACTTGCCAACgtaacaacaacaacaacaacggTAACGGCGCGAGTAACAACAATAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTACCCCCCGAAACGCAACCCACTCCGCCCAGCGCCACCTTGGTCGGCACTACCATTACCCATCTAAGGGATCCGGATCATCATTCTACAGAGATTCAGAACTGCGACAGCGAGATCAAGATCAAGTTCGAGACGTTGCACACGATGGACTCTTCGGACACGATCGACATAGACAGCCATATGTCAGATCGGGCTAGCGTGAGCTCGAAGAACGCCGCCGACGGCGACAACATGATGATGATAACACCAGAATTGCTCGGACTGATGCCGTCGGGAAGCTCTGGCCAGTCGGACTCAGGCGACAACAATTCGAGGGGGCACTCTGGACAGTCCAGCTCACATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGGcAACGTTTGGTATTCCTTCAACGACTTTATGGCAACGAGCGCATCGACTGGGCATCGACACGCCGAAGAAGGATGGTCCCACGAAATCCTGGAGCGATGAAAGCTTGAACAATGCTTTAGAAGCTTTACGTACTGGTACCATTTCGGCTAATAAAGCATCCAAGGCGTTCGGCATACCTTCTAGCACGTTGTATAAAATCGCAAGGAGAGAAGGCATCAGACTGGCTGCACCGTTCAATGCAAGTCCCACGACGTGGACACCCGCCGATCTGGATCGCGCTTTGGAAGCGATAAGATCCGGCCAAACGTCCGTGCAGAGAGCGTCGACGGAATTCGGCATTCCCACGGGGACGTTGTACGGAAGATGCAAGCGGGAAGGAATCGAACTTAGCAGAAGTAATCCCACGCCATGGAGCGAGGACGCTATGACTGAAGCTCTCGAGGCTGTCAGATTAGGGCATATGAGCATCAATCAAGCAGCGATCCATTACAATCTGCCGTATTCGTCATTGTACGGGCGTTTTAAGAGAGGCAAGTACGAAGAACCCGTCGTCGGCGACATCTCGCAGGATGGCAGCAGTCCACACTTTCATCAAAGTCCCAACCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTACCCGGGCAGCTGA
- Protein Sequence
- MHPPPNRPTNQPPAPPPSPSPSPSPNPRSEPPFYSPSVRGSPSAVAVKAPRVGKETSKNRRTSCVSGETFAEILDWISPALIFRSDVDFVGGRTIMLAAASSAVEMKLHRRRAKRDAGDDELAREICKSNRTGPAWSFSLLKTADQLKIKGLCEAPENRDGPPPVSLSSPPRESSTPRLNYTKLKKHHQRYKRPRIERPTFEPRATDLRHYERYKEGEAITTNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADGDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279879;
- 90% Identity
- iTF_01520386;
- 80% Identity
- -