Lnig012343.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- -
- Assembly
- GCA_001045655.1
- Location
- LBMM01005917.1:911-7915[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-12 2.1e-09 36.9 0.0 1 39 279 318 279 322 0.90 2 4 3e-12 3.1e-09 36.4 0.1 2 39 334 371 333 374 0.94 3 4 6.8e-19 7.1e-16 57.6 0.0 1 45 388 433 388 433 0.97 4 4 1.2e-18 1.3e-15 56.8 0.1 1 42 440 482 440 483 0.97
Sequence Information
- Coding Sequence
- atgTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGCGCCGGAGAACAGAGACGGTCCGCCACCCGTGAGCCTGAGCTCGCCGCCGAGGGAGTCCAGCACCCCGAGATTGAACTATACGAAGCTGAAGAAGCACCATCAACGGTACAAGCGACCCAGAATCGAGCGGCCCACGTTCGAGCCGCGCGCCACCGATCTGAGGCACTACGAGCGCTACAAAGAGGAAGAGGCGATTACGATCAACGATTATAGCCGCGATAATAAAGAGAACCATCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCATTGGAAACTTGCCAACgtaacaacaacaacaacaacggtAACGGCGCGAGTAACAACAATAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTACCCCCCGAAACGCAACCCACTCCGCCCAGCGCCACCTTGGTCGGCACTACCATTACCCATCTAAGGGATCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGAGATCAAGATCAAGTTCGAGACGTTGCACACGATGGACTCTTCGGACACGATCGACATAGACAGCCATATGTCAGATCGGGCTAGCGTGAGCTCGAAGAACGCCGCCGACGGCGACAACATGATGATGATAACACCAGAACTGCTCGGACTGATGCCGTCGGGAAGCTCTGGCCAGTCGGACTCAGGCGACAACAATTCTAGGGGGCACTCTGGACAGTCCAGCTCACATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGgcAACGTTCGGTATTCCTTCAACGACTTTATGGCAACGAGCGCATCGACTGGGCATCGACACGCCGAAAAAAGATGGTCCCACGAAATCCTGGAGCGACGAAAGCTTGAACAATGCTTTAGAAGCTTTACGTACTGGTACCATTTCGGCTAATAAAGCATCCAAGGCGTTCGGCATACCTTCTAGCACGTTGTATAAAATCGCAAGGAGAGAAGGCATCAGGCTGGCTGCACCGTTCAATGCAAGTCCCACGACGTGGACGCCCGCCGATCTGGATCGCGCTTTGGAAGCGATAAGATCCGGCCAAACGTCCGTGCAGAGAGCGTCGACGGAATTCGGCATTCCCACGGGGACGTTGTACGGAAGATGCAAGCGAGAAGGAATCGAACTTAGCAGAAGTAATCCCACGCCATGGAGCGAGGACGCTATGACTGAAGCTCTCGAGGCTGTCAGATTAGGGCATATGAGCATCAATCAAGCAGCGATCCATTACAATCTGCCGTATTCGTCATTGTACGGGCGTTTTAAGAGAGGCAAGTACGAAGAACCCGTCGTCGGCGACATCTCGCAGGATGGCAGCAGTCCACACTTTCATCAAAGTCCCAACCAGAATCATTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MSLLKTADQLKIKGLCEAPENRDGPPPVSLSSPPRESSTPRLNYTKLKKHHQRYKRPRIERPTFEPRATDLRHYERYKEEEAITINDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADGDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279879;
- 90% Identity
- iTF_01520386;
- 80% Identity
- iTF_00868680;