Tsim015910.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- -
- Assembly
- GCA_011636635.1
- Location
- VBVQ01000400.1:41550-48714[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-12 1.2e-09 38.2 0.0 1 39 287 326 287 330 0.90 2 4 9.3e-13 7.4e-10 38.9 0.1 2 39 342 379 341 382 0.94 3 4 1.3e-18 1.1e-15 57.6 0.0 1 45 396 441 396 441 0.97 4 4 2.4e-18 2e-15 56.8 0.1 1 42 448 490 448 491 0.97
Sequence Information
- Coding Sequence
- ATGCCGTCGCGAACACCGAGAGAAAcgagaTCGCTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAAAACAGAGACGGTCCGCCTCCCGTGAGCCTGAGCTCACCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGCGATACAAGAGACCCAGAATCGAACGGCCCACGTTCGAGTCGCGCACCACCGATCCGAGACATTACGATCGCTACAAAGAGGAGGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAATCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGccaacgtaataataataacaacaacaacaataacaacGGTAACGGCACGAGTAACAACGGTGACATGTTCTGTCACACAGGGCTAGGGCACTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACTCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACTACCATCACCCACCTGAGGGATCCGGATCATCATACAGAGATTCAGACTTGCGACAGCGTCAAGATCAAATTCGAGACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAGAACGCCGGCGACAGTGACAACATGATGATGATAACACCAGAGTTGTTGGGACTGATGCCATCGGGAAGCTCTGGCCAGTCGGATTCGGGCGAGAACAATTCGAGAGGGCACAGCGGACAATCCAGCTCGCACCATCACGGGTCAAAATCGTGGACGCAAGAAGACATGGACGCGGCTTTAGAGGCATTGAGAAATCACAACATGAGCTTGACGAAAGCTTCGGCAACATTCGGTATCCCCTCGACAACTTTGTGGCAACGGGCACATCGATTGGGTATCGACACGCCGAAGAAAGACGGTCCCACGAAATCCTGGAGCGACGAGAGCTTGAACAACGCTTTAGAAGCGTTACGCACTGGTTCGATTTCGGCTAACAAGGCGTCCAAGGCGTACGGTATACCTTCCAGTACACTGTACAAGATCGCCAGGAGAGAAGGCATTAGACTAGCCGCGCCATTCAACGCAAGTCCCACTACATGGACGCCCGCCGATTTGGATCGCGCCCTAGAAGCAATAAGATCTGGTCAGACCTCCGTGCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGAACTTTGTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGTGAAGACGCTATGACTGAAGCTCTTGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCACTACAATCTGCCGTATTCGTCACTGTACGGGCGCTTCAAGAGAGGCAAATACGAGGAGCCCGTCGTCGGCGACCTTTCACAGGATGGTACCAGTCCGCATTTCCATCAGAGCCCCAACCAGAATCATTCGTCCGCCCTTCCAGATCAAATGCCTTACCCGGGCAGCTGA
- Protein Sequence
- MPSRTPRETRSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFESRTTDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNNGNGTSNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQTCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAGDSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279879;
- 90% Identity
- iTF_01520386;
- 80% Identity
- -